Locus 5974

Sequence ID 2L_DroMel_CAF1
Location 16,840,588 – 16,840,700
Length 112
Max. P 0.799099
window9490

overview

Window 0

Location 16,840,588 – 16,840,700
Length 112
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 73.79
Mean single sequence MFE -36.00
Consensus MFE -21.78
Energy contribution -21.32
Covariance contribution -0.47
Combinations/Pair 1.39
Mean z-score -1.50
Structure conservation index 0.61
SVM decision value 0.61
SVM RNA-class probability 0.799099
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16840588 112 - 22407834
AGGAGUACGCCAGGGAGCUGGCUCGCCAGGGUAUCAACCUGGUGCUCAUCUCGCGGACGAAGGAGAAGCUCAUUGCGGUUACCAAUGAGAUUGGUAAGUGU--UGC----UUAGUA--CU
...((((((((((....))))).(((((((.......)))))))(((...(((....)))..)))((((.....(((.((((((((...)))))))).)))--.))----)).)))--)) ( -43.40)
>DroPse_CAF1 1264 120 - 1
AGGAAUAUGCCAGAGAGUUGGCCCGUCAGGGCCUUAAUCUGGUGCUUGUCUCUCGCACCAAGGAGAAGCUGAUUGCAGUCACCAAUGAGAUUGGUAAGCUCAAACCCAGUCAAUCUUUAU
.((.....((((((.....(((((....)))))....))))))((.........)).))(((((...((((.(((.(((.((((((...))))))..))))))...))))...))))).. ( -36.50)
>DroEre_CAF1 153 114 - 1
AGGAGUAUGCCAGGGAGCUGGCUCGACAGGGUAUCAACCUGGUGCUCAUCUCGCGGACGAAGGAGAAGCUUAUUGCGGUGAGCAAUGAGAUUGGUAAGCAU--GUC----UAAGCAUGAU
..(((((((((((....)))))....((((.......)))))))))).((((.(.......)))))..((((((((.....)))))))).........(((--((.----...))))).. ( -39.10)
>DroWil_CAF1 173 109 - 1
AGGAAUAUGCCAGGGAGCUGGCACGUCAAGGCCUCAAUCUGGUUCUGAUUUCACGUACCAAGGAGAAGCUGAUCCAAGUGACCAAUGAGAUAGGUAAAAC-----UCU---GAUCUC---
.((....((((((....)))))).((((..(((.......)))..))))........))...........((((..(((.(((.........)))...))-----)..---))))..--- ( -29.20)
>DroAna_CAF1 156 104 - 1
AGGAAUAUGCCAGGGAACUGGCUCGCCAGGGCCUCAAUUUAGUGCUCAUCUCGCGCACCAAGGAGAAACUCAUAGCUGUUACCAACGAGAUUGGUAAGUCC--------------A--CA
.((.....(((((....)))))...)).(((((((......((((.(.....).))))....))).............(((((((.....)))))))))))--------------.--.. ( -31.30)
>DroPer_CAF1 1294 120 - 1
AGGAAUAUGCCAGAGAGUUGGCCCGUCAGGGCCUUAAUCUGGUGCUUGUCUCUCGCACCAAGGAGAAGCUGAUUGCAGUCACCAAUGAGAUUGGUAAGCUCAAACCCAGUCAAUCUUUAU
.((.....((((((.....(((((....)))))....))))))((.........)).))(((((...((((.(((.(((.((((((...))))))..))))))...))))...))))).. ( -36.50)
>consensus
AGGAAUAUGCCAGGGAGCUGGCUCGUCAGGGCCUCAAUCUGGUGCUCAUCUCGCGCACCAAGGAGAAGCUGAUUGCAGUCACCAAUGAGAUUGGUAAGCCC____C_____AAUCAU_AU
........((((((.....(((((....)))))....))))))(((.(((((.....(....)....(((......))).......))))).)))......................... (-21.78 = -21.32 +  -0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:54 2006