Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 16,835,179 – 16,835,291 |
Length | 112 |
Max. P | 0.525063 |
Location | 16,835,179 – 16,835,291 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 84.15 |
Mean single sequence MFE | -32.82 |
Consensus MFE | -22.75 |
Energy contribution | -23.76 |
Covariance contribution | 1.01 |
Combinations/Pair | 1.37 |
Mean z-score | -2.03 |
Structure conservation index | 0.69 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.525063 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16835179 112 + 22407834 ACCACCUUUGGCAUCCUGGCCAUCCUGCUUUUCUUCCUCUACCUCAUCUAUGCCGUAUUGUAAAAUGUUUCCGGCAAGUAGAUGGUCCUUAGGGCAGGA-CCAAAGGUAAGAU ...((((((((..(((((((......))........(((((..((((((((((((((((....))))....)))))..)))))))....))))))))))-))))))))..... ( -34.70) >DroSec_CAF1 31984 112 + 1 ACCACCUUUGGCAUCCUGGCCAUUCUGCUUUUCUUCCUCUACCUCAUCUAUGCCGUAUUGUAAAAUGUUUCCGGCAAGUAGAUGGUCCUUAGGGCAGGA-UCAAAGGUAAGUU ...(((((((..((((((((......))........(((((..((((((((((((((((....))))....)))))..)))))))....))))))))))-))))))))..... ( -32.50) >DroEre_CAF1 30114 110 + 1 ACCACCUUUGGCAUCCUGGCCAUCCUGCUUUUCUUCCUUUACCUCAUCUAUGCCGUAUUGUAAAAUGUUUCCGGCAAGUAGAUGGUCCUUAG--CGGAA-CAAAAGGUAAGAC ........((((......)))).........(((((((((...((((((((((((((((....))))....)))))..)))))))(((....--.))).-..))))).)))). ( -27.20) >DroYak_CAF1 27876 112 + 1 ACCACCUUUGGCAUCCUGGCCAUCCUGCUUUUCUUCCUUUACCUCAUCUAUGCCGUAUUGUAAAAUGUUUCCGGCAAGUAGAAGGUCCUUAGGGCAGGA-CAGAAGGUAAGAC ...(((((((((......))).(((((((((....(((((..((......(((((((((....))))....)))))))..))))).....)))))))))-..))))))..... ( -33.90) >DroAna_CAF1 31728 111 + 1 ACCACCUUCGGCAUCCUGGCCGUUCUGCUGUUCUUCCUUUACAUCAUUUAUGCCGUAUUGUAGACU-UUUAUGGCCAGAAUAAGGUCUUUGGAGCAGGA-UAUGAGGUAUAAA ...(((((.(((......)))((((((((.(....((((......((((..((((((..(....).-..))))))..)))))))).....).)))))))-)..)))))..... ( -28.90) >DroPer_CAF1 29398 112 + 1 ACCACCUUCGGCAUCCUGGCCUUCCUGCUCUUCUGCCUGUACCUCAUCUAUGCAGUAUUGUAGACUGC-CAGGGCCACUAGGAGGUCCUUUGAGCAGGAAUAUGGGGUAAGAC (((.((...(((......)))(((((((((.(((((..((((..((....))..)))).)))))....-.((((((.......))))))..)))))))))...)))))..... ( -39.70) >consensus ACCACCUUUGGCAUCCUGGCCAUCCUGCUUUUCUUCCUUUACCUCAUCUAUGCCGUAUUGUAAAAUGUUUCCGGCAAGUAGAAGGUCCUUAGGGCAGGA_CAAAAGGUAAGAC ...(((((((((......))).(((((((((....(((((((........(((((................))))).))))).)).....)))))))))...))))))..... (-22.75 = -23.76 + 1.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:53 2006