| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,820,621 – 16,820,723 |
| Length | 102 |
| Max. P | 0.926537 |
| Location | 16,820,621 – 16,820,723 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.52 |
| Mean single sequence MFE | -26.85 |
| Consensus MFE | -13.66 |
| Energy contribution | -15.38 |
| Covariance contribution | 1.72 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.51 |
| SVM decision value | 1.18 |
| SVM RNA-class probability | 0.926537 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16820621 102 + 22407834 CUAUAGGC------------------UUGGUAUGCCUUAAAUAAUCCUAAAACUAGGUCUAUGGUUUUGAAAGGUGGCUUGGCAACAGUCAUAUCAAGAUCAGCUAAUCUCGAUUCAAUU ..((((((------------------(((((....................)))))))))))((((((((...((((((.(....))))))).))))))))................... ( -26.25) >DroSec_CAF1 17144 120 + 1 CCAUAAGUAUGUAAAAUAUUGAGAUUUUGGCAUGCCUUAAAUAAUCCUAAAACUAGGGCUAUGGUUUUGAAAGCUGGCUUGGCAACAGUCAUAUCAAGAUCAGCUAAUCUCGAAUCAAUA ..................(((((((..((((..((((((..............))))))..(((((((((....(((((.(....))))))..))))))))))))))))))))....... ( -31.14) >DroSim_CAF1 17454 120 + 1 CCAUAAGUAUGAAAAAUAUUGAGAUUUUGGCAUGCCUUAAAUAAUCCUAAAACUAGGGCUAUGGUUUUGAAAGCUGGCUUGGCAACAGUCAUAUCAAGAUCAGCUAAUCUCGAUUCAAUA .........(((.....((((((((..((((..((((((..............))))))..(((((((((....(((((.(....))))))..))))))))))))))))))))))))... ( -31.74) >DroEre_CAF1 15668 103 + 1 CUGCAC----------------GUUUUUGACAUGCCUUAA-AAAUUCUAAUACUAGGGCUAUGGCUUUGAAAACUUGCGUGGCAACAGUCAUAUCAAGAUCAGCUAAUCUCAAAUCAGUG ...(((----------------...(((((...((((((.-............))))))..(((((..((...((((.(((((....)))))..)))).)))))))...)))))...))) ( -21.42) >DroYak_CAF1 13147 93 + 1 CUGCAC----------------GA-----------CUUAAAUAGUCCUAAAACUAGGGCUAUGGCUUUGAAAUGUUGCUUGGCAACAGUCAUAUCAAGAUCAGCUAAUCUGGAAUCAGUG ...(((----------------((-----------(....(((((((((....)))))))))..........((((((...)))))))))...((.((((......)))).))....))) ( -23.70) >consensus CUAUAAG_______________GAUUUUGGCAUGCCUUAAAUAAUCCUAAAACUAGGGCUAUGGUUUUGAAAGCUGGCUUGGCAACAGUCAUAUCAAGAUCAGCUAAUCUCGAAUCAAUA ..........................(((((..............((((....))))....(((((((((....((((.((....))))))..))))))))))))))............. (-13.66 = -15.38 + 1.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:52 2006