Locus 5971

Sequence ID 2L_DroMel_CAF1
Location 16,804,591 – 16,804,694
Length 103
Max. P 0.937755
window9487

overview

Window 7

Location 16,804,591 – 16,804,694
Length 103
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 92.82
Mean single sequence MFE -29.40
Consensus MFE -22.86
Energy contribution -23.34
Covariance contribution 0.48
Combinations/Pair 1.06
Mean z-score -2.29
Structure conservation index 0.78
SVM decision value 1.26
SVM RNA-class probability 0.937755
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16804591 103 - 22407834
CAACAGCAGCGCCAGUUGCAGUUGCAGCUUCAGGCUUUUUGUUGCCGGCAGUUAAUUUCAUUUAAAGAAUGUCAUCUUCACUUUAAGUGAAAGAUAAAUGCGC
.....(((..(((((((((....))))))...(((........))))))......((((((((((((..((.......))))))))))))))......))).. ( -30.70)
>DroSec_CAF1 1659 103 - 1
CAACAGCAGCGCCAGUUGCAGUUGCAGCUUGAGGCUUUUUGUUACCGGCAGUUAAUUUCAUUUAAAGAAUGUCAUCUUCACUUUAAGUGAAAGAUAAAUGCGC
.(((((.((.(((((((((....))))))...))))).)))))....(((.(((.((((((((((((..((.......))))))))))))))..))).))).. ( -27.40)
>DroSim_CAF1 1622 101 - 1
CAACAGCAGCGCCAGUUGCAGUUGCAGCUUCAGGCUUU-UGGUGCCGGCAGU-AAUUUCAUUUAAAGAAUGUCAUCUUCACUUUAAGUGAAAGAUAAAUGCGC
.....(((..(((((((((....))))))...(((...-....))))))...-..((((((((((((..((.......))))))))))))))......))).. ( -30.40)
>DroEre_CAF1 167 102 - 1
CAACA-CAGUUGCAGUUGCAGUUGCAGCUUCAGGCUUUUUGUUGCCGGCAGUUAAUUUCAUUUAAAGAAUGUCAUCUUCACUUUAAGUGAAAGAUAAACGCGC
.....-....((.((((((....)))))).))(((........))).((..(((.((((((((((((..((.......))))))))))))))..)))..)).. ( -25.90)
>DroAna_CAF1 1748 102 - 1
CAUCAGUAGCGGCAGUUGCAGUUGCAGUUGCU-GCUUUUUGUUGCCGGCAGGUAAUUUCAUUUAAAGAAUGUCAUCUUCACUUUAAGUGAAAGAUAAAUGCUC
((.(((.(((((((..(((....)))..))))-)))..))).))..((((..((.((((((((((((..((.......))))))))))))))..))..)))). ( -32.60)
>consensus
CAACAGCAGCGCCAGUUGCAGUUGCAGCUUCAGGCUUUUUGUUGCCGGCAGUUAAUUUCAUUUAAAGAAUGUCAUCUUCACUUUAAGUGAAAGAUAAAUGCGC
(((((..(((...((((((....))))))....)))...)))))...(((.....((((((((((((..((.......))))))))))))))......))).. (-22.86 = -23.34 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:50 2006