Locus 5970

Sequence ID 2L_DroMel_CAF1
Location 16,802,994 – 16,803,113
Length 119
Max. P 0.960485
window9485 window9486

overview

Window 5

Location 16,802,994 – 16,803,098
Length 104
Sequences 3
Columns 104
Reading direction forward
Mean pairwise identity 99.36
Mean single sequence MFE -43.10
Consensus MFE -42.17
Energy contribution -42.17
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.23
Structure conservation index 0.98
SVM decision value 1.21
SVM RNA-class probability 0.931678
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16802994 104 + 22407834
UGACGAAGUCGACGGCGCUGCCAACUGCGCUGGCGACGCGUGUCUUUAUGGAUUCGCUUUGGCCAAAAGCGUUGGUCAAAAGCGUUGCGACGGCGGCAACACCA
.......((((.(((((((((((((.((..((((.(.(((.((((....)))).)))..).))))...))))))))....)))))))))))((.(....).)). ( -44.90)
>DroSec_CAF1 86 104 + 1
UGACGAAGUCGACUGCGCUGCCAACUGCGCUGGCGACGCGUGUCUUUAUGGAUUCGCUUUGGCCAAAAGCGUUGGUCAAAAGCGUUGCGACGGCGGCAACACCA
.......((((...(((((((((((.((..((((.(.(((.((((....)))).)))..).))))...))))))))....)))))..))))((.(....).)). ( -42.20)
>DroSim_CAF1 77 104 + 1
UGACGAAGUCGACUGCGCUGCCAACUGCGCUGGCGACGCGUGUCUUUAUGGAUUCGCUUUGGCCAAAAGCGUUGGUCAAAAGCGUUGCGACGGCGGCAACACCA
.......((((...(((((((((((.((..((((.(.(((.((((....)))).)))..).))))...))))))))....)))))..))))((.(....).)). ( -42.20)
>consensus
UGACGAAGUCGACUGCGCUGCCAACUGCGCUGGCGACGCGUGUCUUUAUGGAUUCGCUUUGGCCAAAAGCGUUGGUCAAAAGCGUUGCGACGGCGGCAACACCA
.......((((.(..((((((((((.((..((((.(.(((.((((....)))).)))..).))))...))))))))....))))..)))))((.(....).)). (-42.17 = -42.17 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 6

Location 16,803,022 – 16,803,113
Length 91
Sequences 3
Columns 91
Reading direction forward
Mean pairwise identity 100.00
Mean single sequence MFE -35.70
Consensus MFE -35.70
Energy contribution -35.70
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.37
Structure conservation index 1.00
SVM decision value 1.51
SVM RNA-class probability 0.960485
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16803022 91 + 22407834
GCUGGCGACGCGUGUCUUUAUGGAUUCGCUUUGGCCAAAAGCGUUGGUCAAAAGCGUUGCGACGGCGGCAACACCACGAAGACAAGUGCAG
......(.(((.((((((..(((....(((((((((((.....)))))).)))))(((((.......))))).)))..)))))).)))).. ( -35.70)
>DroSec_CAF1 114 91 + 1
GCUGGCGACGCGUGUCUUUAUGGAUUCGCUUUGGCCAAAAGCGUUGGUCAAAAGCGUUGCGACGGCGGCAACACCACGAAGACAAGUGCAG
......(.(((.((((((..(((....(((((((((((.....)))))).)))))(((((.......))))).)))..)))))).)))).. ( -35.70)
>DroSim_CAF1 105 91 + 1
GCUGGCGACGCGUGUCUUUAUGGAUUCGCUUUGGCCAAAAGCGUUGGUCAAAAGCGUUGCGACGGCGGCAACACCACGAAGACAAGUGCAG
......(.(((.((((((..(((....(((((((((((.....)))))).)))))(((((.......))))).)))..)))))).)))).. ( -35.70)
>consensus
GCUGGCGACGCGUGUCUUUAUGGAUUCGCUUUGGCCAAAAGCGUUGGUCAAAAGCGUUGCGACGGCGGCAACACCACGAAGACAAGUGCAG
......(.(((.((((((..(((....(((((((((((.....)))))).)))))(((((.......))))).)))..)))))).)))).. (-35.70 = -35.70 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:49 2006