Locus 5969

Sequence ID 2L_DroMel_CAF1
Location 16,802,594 – 16,802,687
Length 93
Max. P 0.921033
window9484

overview

Window 4

Location 16,802,594 – 16,802,687
Length 93
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 77.95
Mean single sequence MFE -26.72
Consensus MFE -18.43
Energy contribution -18.43
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.81
Structure conservation index 0.69
SVM decision value 1.14
SVM RNA-class probability 0.921033
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16802594 93 - 22407834
UACUGGCAAU---CGGGUCGUAAAAUAUGUUAAAAGCUUUGGGCA--------------------GCAAAAACAAUUGGCAAUAGUCAUGACAUGACUGGCUGUCAAUUGGCGUUG
..(((.(...---.((((..(((......)))...))))..).))--------------------)(((...(((((((((.(((((((...)))))))..)))))))))...))) ( -22.70)
>DroPse_CAF1 4989 115 - 1
UACCUGG-GGCCACAAAUCGUAAAAUAUGUUAAGAGCUUCGGGCCACAGCCAACAGCAACAACAGACAAAAGCAAUUGGCAAUAGUCAUGACAUGACUGGCUGUCAAUUGUUGCUU
...(((.-((((.....((.(((......))).))......)))).))).....((((((((..((((...((.....))..(((((((...)))))))..))))..)))))))). ( -32.00)
>DroEre_CAF1 4412 93 - 1
UACUGGCAAU---CGGGUCGUAAAAUAUGUUAAAAGCUUUGGGCA--------------------GCAAAAACAAUUGGCAAUAGUCAUGACAUGACUGGCUGUCAAUUGACGUUG
(((.(((...---...))))))....((((.....(((......)--------------------)).....(((((((((.(((((((...)))))))..))))))))))))).. ( -22.10)
>DroYak_CAF1 4459 93 - 1
UACUGGCAAU---CGGGUUGUAAAAUAUGUUAAAAGCUUUGGGCA--------------------GCAAAAACAAUUGGCAAUAGUCAUGACAUGACUGGCUGUCAAUUGGCGUUG
.....((...---...(((((..((...((.....)).))..)))--------------------)).....(((((((((.(((((((...)))))))..))))))))))).... ( -24.90)
>DroAna_CAF1 4654 96 - 1
UACUGUCGGUCAACAGAUCGUAAAAUAUGUUAAAAGCUUUGGGCA--------------------GCAAAAACAAUUGGCAAUAGUCAUGACAUGACUGGCUGUCAAUUGGAGUUG
..(((((((((....)))).........((.....))....))))--------------------)(((...(((((((((.(((((((...)))))))..)))))))))...))) ( -26.60)
>DroPer_CAF1 5014 115 - 1
UACCUGG-GGCCACAAAUCGUAAAAUAUGUUAAGAGCUUCGGGCCACAGCCAACAGCAACAACAGACAAAAGCAAUUGGCAAUAGUCAUGACAUGACUGGCUGUCAAUUGUUGCUU
...(((.-((((.....((.(((......))).))......)))).))).....((((((((..((((...((.....))..(((((((...)))))))..))))..)))))))). ( -32.00)
>consensus
UACUGGCAAU___CAGAUCGUAAAAUAUGUUAAAAGCUUUGGGCA____________________GCAAAAACAAUUGGCAAUAGUCAUGACAUGACUGGCUGUCAAUUGGCGUUG
...................................((.....))............................(((((((((.(((((((...)))))))..)))))))))...... (-18.43 = -18.43 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:48 2006