| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,792,609 – 16,792,729 |
| Length | 120 |
| Max. P | 0.863302 |
| Location | 16,792,609 – 16,792,729 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.28 |
| Mean single sequence MFE | -39.63 |
| Consensus MFE | -20.86 |
| Energy contribution | -21.70 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.37 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.84 |
| SVM RNA-class probability | 0.863302 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16792609 120 + 22407834 AGUUUUCGGAACACACAGUCCUUCGCACGUGAUCGUGCAUAUGGCUGUGAUGAAAGCCCUUGCUGAUCGAGGUCACAACAUUACAGUGGUGACCCAGAUGAAACCGAAAUUGGCGACACA ...((((((..(((((((((....(((((....)))))....))))))).))..(((....))).(((..((((((.((......)).))))))..)))....)))))).((....)).. ( -40.20) >DroPse_CAF1 16506 120 + 1 AGUAUUCAACAGUCACAGUCCCUCUCAUGUGAUCGUAAACAUGGCUGUGGCUAAGACUCUGGCAGAUCGGGGUCACAACAUCACAGUGCUGACCCAGAUGAAGCCCAAGUUUCAGCCUCA ..........(((((((((......(((((........))))))))))))))........(((..(((.((((((..((......))..)))))).)))(((((....))))).)))... ( -37.60) >DroSim_CAF1 12973 120 + 1 AGUUUUCGGGACCCACAGUCCUUCGCACGUGAUCGUGCAUAUGGCUGUGAUGAAAGCCCUUGCAGAUCGGGGUCACAACAUUACAGUGGUGACCCAGAUGAAACCGAAAAUGGCGGCACA .((((((((....(((((((....(((((....)))))....)))))))......((....))..(((.(((((((.((......)).))))))).)))....))))))))......... ( -44.00) >DroWil_CAF1 15890 120 + 1 CGUUUUCGGCAGUGAGAGUCCCUCACAUCUGAUUGUUCAUAUGUCGUUGAUAAAGGCUUUAGCUGAUCGGGGACAUAAUAUCACAGUGGUUGCGGCAUUGAAGCCAAAACUAGCCCCACA .......(((.(((((.....)))))..(((..((....((((((.(((((...(((....))).))))).))))))....)))))(((((..(((......)))..))))))))..... ( -36.10) >DroYak_CAF1 16032 120 + 1 UGUUUUCAGCACCCCCAGCCCUUCGCACGUGAUCGUGCAUAUGGCUGUGAUGAAAGCCCUUGCAGAUCGAGGUCACAACAUUACAGUGGUGACCCAGAUGAAACCGAGACUGGCGGCACA .(((((((.(((....((((....(((((....)))))....))))))).)))))))...(((..(((..((((((.((......)).))))))..)))....(((....)))..))).. ( -38.40) >DroAna_CAF1 13722 120 + 1 AAUUUUCGGCUCCCAUAGCCCCUCGCAUGUUAUUGUGCACAUGGCUAUGAUGAAGACUUUGGCGGAUCGGGGUCACAACAUCACCGUGGUGACCCAAAUGAAACCCAAACUCAAGGCGCA ........((.(((((((((....((((......))))....))))))).....((.(((((.(..((.(((((((.((......)).)))))))....))..)))))).))..)).)). ( -41.50) >consensus AGUUUUCGGCACCCACAGUCCCUCGCACGUGAUCGUGCAUAUGGCUGUGAUGAAAGCCCUUGCAGAUCGGGGUCACAACAUCACAGUGGUGACCCAGAUGAAACCGAAACUGGCGGCACA .(((((((.....(((((((....(((((....)))))....))))))).))))))).........(((.((((((.((......)).))))))....)))................... (-20.86 = -21.70 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:46 2006