Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 16,790,157 – 16,790,256 |
Length | 99 |
Max. P | 0.541505 |
Location | 16,790,157 – 16,790,256 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 71.63 |
Mean single sequence MFE | -31.73 |
Consensus MFE | -14.99 |
Energy contribution | -13.39 |
Covariance contribution | -1.60 |
Combinations/Pair | 1.65 |
Mean z-score | -1.62 |
Structure conservation index | 0.47 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.541505 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16790157 99 + 22407834 UAAUCAAAUGAUCGGAGUUCACUUCGUGUUUUUGUUGCUUCUCGGCGUGGUUGCCUCCACCCAGGGAGCUAACAUUUUGGGGCUCUUCAGCAGUCACAG ........(((..(((((((.(...(((((......(((((..((.((((......))))))..))))).)))))...))))))))))).......... ( -28.40) >DroPse_CAF1 14213 95 + 1 ----AAAAUGUUAGCAGUCCGCUCCAUAUUUUUAUUGCUAGCUACGUUAGCGGUGUGCGCUCGCGGAGCGAACAUUUUGGGACUGUUCAGCAGUCACAG ----....(((((((((((((((((.......((((((((((...)))))))))).((....)))))))...(.....))))))))).))))....... ( -34.50) >DroEre_CAF1 12591 99 + 1 GCUCAAAAUGAUUGGGAUGCGCUGCGUACUUGUGUUGCUACUCGGAGUGGUGGCCACCACCCAGGGAGCCAACAUUUUGGGGCUCUUCAGCAGCCACAG .(((((.....))))).((.(((((((((....).)))..(((((((((.((((..((.....))..)))).)))))))))........)))))))... ( -32.90) >DroYak_CAF1 13157 99 + 1 UAUUAAAAUGAUCGGGGUCCGCUGCGUACUUUUGUUGCUACUCGGUGUGGUGGCCUCCACCCAUGGAGCUAACAUUUUGGGGCUCUUCAGCAGCCACAG ........(((..(((((((((.(((......))).))..(((.(((.(((((...)))))))).)))...........)))))))))).......... ( -29.40) >DroAna_CAF1 11253 97 + 1 --CCAAAAUGUUGGUGGCUCGCCCCGUAAUUUUGCUGUUGGCUAUUUUGAUAGCCUCCUCGAAUGGAGCCAAUAUUUUGGGACUGUUCAGCAGUCACAG --(((((((((((((((....))((((....(((..(..((((((....))))))..).))))))).)))))))))))))(((((.....))))).... ( -35.70) >DroPer_CAF1 14078 95 + 1 ----AAAAUGUUAGCAGUCCGCUCCAUAUUUUUAUUACUAGCUACUUUAGCGGUGUGCGCUCGCGGAGCGAACAUUUUGGGACUGUUUAGCAGUCACAG ----....(((((((((((((((((..........((((.((((...)))))))).((....)))))))...(.....))))))).))))))....... ( -29.50) >consensus ____AAAAUGAUAGGAGUCCGCUCCGUAUUUUUGUUGCUACCCAGUGUGGUGGCCUCCACCCACGGAGCCAACAUUUUGGGACUCUUCAGCAGUCACAG ........((...((((((((((((........((((((((.....))))))))..........)))))...(.....))))))))....))....... (-14.99 = -13.39 + -1.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:45 2006