Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 16,782,560 – 16,782,680 |
Length | 120 |
Max. P | 0.876920 |
Location | 16,782,560 – 16,782,680 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.94 |
Mean single sequence MFE | -43.18 |
Consensus MFE | -39.96 |
Energy contribution | -39.27 |
Covariance contribution | -0.69 |
Combinations/Pair | 1.12 |
Mean z-score | -1.25 |
Structure conservation index | 0.93 |
SVM decision value | 0.90 |
SVM RNA-class probability | 0.876920 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16782560 120 + 22407834 AAGACAUACAAGAGGCAGAUCGAGGAGGCUGAGGAAAUCGCCGCCCUCAACUUGGCCAAAUUCCGCAAGGCUCAGCAGGAGCUUGAGGAGGCCGAGGAGCGCGCCGAUCUGGCCGAGCAG .............((((((((((((.(((.((.....)))))..))))..(((((((....(((...((((((.....))))))..)))))))))).........))))).)))...... ( -48.50) >DroVir_CAF1 2841 120 + 1 AAGACAUACAAGAGGCAGAUCGAGGAAGCCGAGGAAAUCGCUGCCCUCAACUUGGCCAAAUUCCGCAAGGCCCAGCAGGAGCUCGAGGAAGCCGAGGAGCGUGCCGAUCUGGCUGAGCAG ............((.((((((((((.(((.((.....)))))..))))..((((((....((((....(((((....)).)))...)))))))))).........)))))).))...... ( -40.40) >DroGri_CAF1 2951 120 + 1 AAGACAUACAAGAGGCAGAUCGAGGAGGCCGAGGAAAUCGCCGCCCUCAACUUGGCCAAAUUCCGCAAGGCCCAGCAGGAGCUCGAGGAAGCCGAGGAGCGUGCCGAUCUGGCUGAGCAG ............((.((((((((((.(((.((.....)))))..))))..((((((....((((....(((((....)).)))...)))))))))).........)))))).))...... ( -42.40) >DroWil_CAF1 2257 120 + 1 AAGACAUACAAGAGGCAGAUUGAGGAAGCCGAGGAAAUCGCUGCCCUCAACUUGGCCAAAUUCCGCAAGGCCCAGCAGGAGCUCGAGGAAGCCGAGGAGCGUGCCGAUCUGGCUGAGCAG ............((.((((((((((.(((.((.....)))))..))))..((((((....((((....(((((....)).)))...)))))))))).........)))))).))...... ( -37.50) >DroMoj_CAF1 2826 120 + 1 AAGACAUACAAGAGGCAGAUCGAGGAGGCUGAGGAAAUCGCCGCCCUCAACUUGGCCAAAUUCCGCAAGGCCCAGCAGGAGCUCGAGGAAGCCGAGGAGCGUGCCGAUCUGGCUGAACAG ............((.(((((((.(.(.(((((((..........))))..((((((....((((....(((((....)).)))...)))))))))).))).).)))))))).))...... ( -42.50) >DroAna_CAF1 2792 120 + 1 AAGACAUACAAGAGGCAGAUCGAGGAGGCUGAGGAAAUCGCCGCCCUCAACUUGGCCAAAUUCCGCAAGGCUCAGCAGGAGCUGGAGGAGGCCGAGGAGCGUGCCGAUCUGGCCGAGCAG .............(((((((((.(.(.(((((((..........))))..(((((((.....((....))((((((....))).)))..))))))).))).).))))))).)))...... ( -47.80) >consensus AAGACAUACAAGAGGCAGAUCGAGGAGGCCGAGGAAAUCGCCGCCCUCAACUUGGCCAAAUUCCGCAAGGCCCAGCAGGAGCUCGAGGAAGCCGAGGAGCGUGCCGAUCUGGCUGAGCAG ............((.((((((((((.(((.((.....)))))..))))..((((((....((((....(((((....)).)))...)))))))))).........)))))).))...... (-39.96 = -39.27 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:42 2006