Locus 5963

Sequence ID 2L_DroMel_CAF1
Location 16,782,320 – 16,782,440
Length 120
Max. P 0.881294
window9477

overview

Window 7

Location 16,782,320 – 16,782,440
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 90.50
Mean single sequence MFE -47.73
Consensus MFE -42.58
Energy contribution -41.62
Covariance contribution -0.96
Combinations/Pair 1.28
Mean z-score -1.68
Structure conservation index 0.89
SVM decision value 0.92
SVM RNA-class probability 0.881294
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16782320 120 + 22407834
CGUCUGGACGAGGCUGAGGCCAACGCCCUCAAGGGAGGCAAGAAGGCCAUUCAGAAGCUUGAGCAGCGCGUCCGCGAGCUCGAGAACGAGCUGGAUGGUGAGCAGAGGAGGCACGCCGAU
.(((((((((..((((.((((..(..((((....))))...)..)))).(((((....))))))))).)))))...((((((....))))))))))((((.((.......)).))))... ( -48.30)
>DroVir_CAF1 2601 120 + 1
CGUCUGGAUGAGGCUGAGGCCAAUGCCCUUAAGGGUGGCAAGAAGGCUAUCCAGAAAUUGGAGCAGCGCGUCCGCGAGCUCGAGAACGAGCUGGAUGGUGAGCAGAGAAGACACGCCGAU
.(((((((((..((((...(((((...((...(((((((......)))))))))..)))))..)))).)))))...((((((....))))))))))((((.((......).).))))... ( -44.40)
>DroPse_CAF1 5421 120 + 1
CGCCUGGAUGAGGCUGAGGCCAAUGCCCUUAAGGGCGGCAAGAAGGCCAUCCAGAAGUUGGAGCAGCGCGUCCGCGAGCUCGAGAACGAGCUGGACGGUGAGCAGAGGAGACACGCCGAU
...(((((((.(.((...(((...((((....)))))))....)).))))))))..(((((.((.((.(((((...((((((....)))))))))))))..))...(....)...))))) ( -52.20)
>DroGri_CAF1 2711 120 + 1
CGUCUGGAUGAGGCCGAGGCCAAUGCCCUCAAGGGCGGCAAGAAGGCCAUCCAGAAGUUGGAGCAGCGCGUCCGCGAGCUCGAGAACGAGCUGGAUGGUGAGCAGAGGCGACAUGCCGAU
..(((((((..((((...(((...((((....))))))).....))))))))))).((((...))))((..((((.((((((....)))))).).)))...))...(((.....)))... ( -51.80)
>DroWil_CAF1 2017 120 + 1
CGUCUGGAUGAGGCUGAGGCCAACGCCCUUAAGGGUGGCAAGAAGGCCAUUCAGAAGUUGGAGCAACGCGUCCGCGAAUUGGAGAACGAAUUGGACGGUGAGCAGCGCCGUCAUGCUGAU
..((((((((.(.((...(((...((((....)))))))....)).)))))))))......((((.(((....))).................(((((((.....))))))).))))... ( -43.40)
>DroAna_CAF1 2552 120 + 1
CGUCUCGAUGAAGCCGAGGCCAACGCCCUUAAGGGUGGCAAGAAGGCUAUCCAGAAGUUGGAGCAGCGCGUCCGCGAGCUCGAGAACGAGCUGGAUGGUGAGCAGAGGCGACAUGCCGAU
((((((.....((((...(((...((((....))))))).....)))).(((((...)))))((.((.(((((...((((((....)))))))))))))..)).)))))).......... ( -46.30)
>consensus
CGUCUGGAUGAGGCUGAGGCCAACGCCCUUAAGGGUGGCAAGAAGGCCAUCCAGAAGUUGGAGCAGCGCGUCCGCGAGCUCGAGAACGAGCUGGAUGGUGAGCAGAGGAGACACGCCGAU
..(((((((..((((...(((...((((....))))))).....))))))))))).(((((.((.((.(((((...((((((....)))))))))))))..))...(....)...))))) (-42.58 = -41.62 +  -0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:41 2006