Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 16,779,511 – 16,779,616 |
Length | 105 |
Max. P | 0.938827 |
Location | 16,779,511 – 16,779,616 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.08 |
Mean single sequence MFE | -33.93 |
Consensus MFE | -26.66 |
Energy contribution | -26.47 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.09 |
Mean z-score | -2.28 |
Structure conservation index | 0.79 |
SVM decision value | 1.30 |
SVM RNA-class probability | 0.938827 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16779511 105 + 22407834 CUAACCUGCGCAAGAAGCACAACGAUGCCGUCGCCGAGAUGGCCGAGCAGGUUGAUCAGCUCAACAAGCUGAAGGCUAAGUAAGUAUUGCG-------------AAUAUUAU--UAGACU .((((((((((.....))....((..((((((.....)))))))).)))))))).((((((.....)))))).((((((...(((((....-------------.))))).)--))).)) ( -32.90) >DroVir_CAF1 9633 109 + 1 CCAACCUGCGCAAGAAGCACAACGAUGCCGUCGCUGAGAUGGCCGAACAGGUUGAUCAGCUCAACAAGCUGAAGGCCAAGUAAGUAAAAUUCC------AA-UUGAUCUCUC--UAGA-- .(((((((.((.....))....((..((((((.....))))))))..))))))).((((((.....))))))((..(((..............------..-)))..))...--....-- ( -29.39) >DroGri_CAF1 9831 112 + 1 CCAACCUGCGCAAGAAGCACAACGAUGCCGUCGCCGAGAUGGCCGAACAGGUUGAUCAGCUCAACAAGCUGAAGGCCAAGUAAGUAAAAUUCACUCUCUUU-CCGCA---CA--UAGA-- .(((((((.((.....))....((..((((((.....))))))))..))))))).((((((.....)))))).((..(((..(((.......)))..))).-))...---..--....-- ( -31.90) >DroWil_CAF1 9232 115 + 1 CCAACCUGCGCAAGAAGCACAACGAUGCUGUCGCUGAGAUGGCCGAGCAAGUUGAUCAGCUCAACAAGCUGAAGGCUAAGUAAGUAGAACGGGCG----GGUUGGAUAUCUUGGCUGAA- (((((((((.(..((((((......)))).))(((....(((((.(((..(((((.....)))))..)))...)))))....))).....).)))----))))))..............- ( -39.10) >DroMoj_CAF1 9828 110 + 1 CCAACCUGCGCAAGAAGCACAACGAUGCCGUCGCCGAGAUGGCCGAACAGGUUGAUCAGCUCAACAAGCUGAAGGCCAAGUAAGUAGAAUACC-----UCA-ACGAACUAUC--UAGA-- .(((((((.((.....))....((..((((((.....))))))))..))))))).((((((.....))))))......(((..((.((.....-----)).-))..)))...--....-- ( -30.90) >DroAna_CAF1 9343 105 + 1 CUAACCUGCGCAAGAAGCACAACGAUGCCGUCGCCGAGAUGGCCGAGCAGGUUGAUCAGCUCAACAAGCUGAAGGCUAAGUAAGUAUCCUU-------------UUUAUUUA--AAGCCA .((((((((((.....))....((..((((((.....)))))))).)))))))).((((((.....)))))).((((...((((((.....-------------..))))))--.)))). ( -39.40) >consensus CCAACCUGCGCAAGAAGCACAACGAUGCCGUCGCCGAGAUGGCCGAACAGGUUGAUCAGCUCAACAAGCUGAAGGCCAAGUAAGUAAAAUUC____________GAUAUCUA__UAGA__ .(((((((.((.....))....((..((((((.....))))))))..))))))).((((((.....))))))................................................ (-26.66 = -26.47 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:34 2006