Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,809,480 – 1,809,582 |
Length | 102 |
Max. P | 0.991236 |
Location | 1,809,480 – 1,809,582 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 69.62 |
Mean single sequence MFE | -22.67 |
Consensus MFE | -16.80 |
Energy contribution | -18.42 |
Covariance contribution | 1.63 |
Combinations/Pair | 1.36 |
Mean z-score | -1.75 |
Structure conservation index | 0.74 |
SVM decision value | 2.26 |
SVM RNA-class probability | 0.991236 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1809480 102 + 22407834 ACACUACGCAUUUGUCGAAUGUAUUUCUCUAUGAAAUUCGAUUGGCAAACAAAGGAAAAGCCACGAGGAAAACUGCACAACAAACAAACCUUUGUGGUUCC--------------U---- ..........((((((((.((.(((((.....))))).)).))))))))...((((...(((((((((.....................))))))))))))--------------)---- ( -24.30) >DroSim_CAF1 6412 103 + 1 ACACUACGCAUUUGUCGAAUGUAUUUCUCUAUGAAAUACAA---ACAAACAAAGGAAAAGCCACGAGGAAAACUGCACAACAAACAAACCUUUGUGGUUCC--------------ACGAA ..............(((..((((((((.....)))))))).---.........(((...(((((((((.....................))))))))))))--------------.))). ( -23.30) >DroPer_CAF1 20240 117 + 1 AAACUGCGCAAUUUCCAUGUUUAUUUCCCUGGGAAGUACUCCGGGAAAACA---CGAAAGCCCCAAUGAAAACUCCGCUACACACAGACCUUUGUGGUUCUUUUGCUUUGGUUCUUUGAU .....(((...(((.(((.....((((((.(((.....))).))))))...---(....).....))).)))...)))....((.(((((...(..(.....)..)...)).))).)).. ( -21.70) >DroEre_CAF1 13707 102 + 1 ACACUGCGCAUCUUUCAAAUGAAUUUUUCUAUGAAAUUCGCUUGG----CAAAGGAAAAGCCACGAGGAAAACUACCCAACAAACAAACCUUUGUGGUUUC--------------AGGAA ...(((....((((((((.((((((((.....)))))))).))))----...)))).(((((((((((.....................))))))))))))--------------))... ( -21.40) >consensus ACACUACGCAUUUGUCAAAUGUAUUUCUCUAUGAAAUACGAUUGGCAAACAAAGGAAAAGCCACGAGGAAAACUGCACAACAAACAAACCUUUGUGGUUCC______________A_GAA ...........(((((((.((((((((.....)))))))).)))))))..........((((((((((.....................))))))))))..................... (-16.80 = -18.42 + 1.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:35 2006