| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,775,246 – 16,775,336 |
| Length | 90 |
| Max. P | 0.645292 |
| Location | 16,775,246 – 16,775,336 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 86.25 |
| Mean single sequence MFE | -27.92 |
| Consensus MFE | -21.55 |
| Energy contribution | -21.50 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.645292 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16775246 90 + 22407834 ACUG-AAAACAUCCAUGGAGUCGGACCAUGUCGAGAUGGAAACUAAGCAAAAAGCUUAGACUCUUGAC-CGGGGACACUCUGUUCGCAUGUC ....-...(((((.(((((((.(..((..(((((((.(....((((((.....)))))).))))))))-..))..))))))))..).)))). ( -27.60) >DroSec_CAF1 4869 90 + 1 ACUG-AAAACACCCAUAGAGUCGGACCUUGUCGAGAUGCAAACUAAGCAAAAAGCUUAGAGUCUUGGC-CUGGGACACUCUGUUCGCAUGUC ....-.........(((((((.(..((..((((((((.....((((((.....)))))).))))))))-..))..))))))))......... ( -29.50) >DroSim_CAF1 5408 90 + 1 ACUG-AAAACACCCAUGGAGUUGGACCUUGUCGAGAUGCAAACUAAGCAAAAAGCUUAGAGUCUUGGC-CUGGAACACUCUGUUCGCAUGUC ....-.........(((((((.(..((..((((((((.....((((((.....)))))).))))))))-..))..))))))))......... ( -26.10) >DroEre_CAF1 4888 90 + 1 ACUG-AAAACAACCAUGGAGUCGGACCUUGUCGAGAUGCAAACUAAGCAAAAAGCUUAGACUCUUGAC-CGGGGCCACUCUGCUCGCAUGAC ....-........(((((((.(((((((.(((((((.(....((((((.....)))))).))))))))-.))).....))))))).)))).. ( -28.50) >DroYak_CAF1 4866 90 + 1 ACUG-AAAACACCCAUGGAGUUGGACCUUGUCGAGAGGCAAACUAAGCAAAAAGCCUAGAGUCUUGAC-CGGGGACACUCUGUUCGCAUGAC ....-.........(((((((.(..(((.((((((((((..............))).....)))))))-.)))..))))))))......... ( -23.64) >DroAna_CAF1 5123 92 + 1 AAUGAAACACACUCGCGGAGCUGCUCCCGAUCGAGAUGGAAACUAAGCAAAAAGCCUAGAAUCUCGACUCUGGAACACUCCGUGUGCAUGUC ......(((..(.(((((((.((.(((.(((((((((.....(((.((.....)).))).))))))).)).))).))))))))).)..))). ( -32.20) >consensus ACUG_AAAACACCCAUGGAGUCGGACCUUGUCGAGAUGCAAACUAAGCAAAAAGCUUAGAGUCUUGAC_CGGGGACACUCUGUUCGCAUGUC ..............(((((((.(..((..(((((((......((((((.....))))))..)))))))...))..))))))))......... (-21.55 = -21.50 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:21 2006