Locus 5952

Sequence ID 2L_DroMel_CAF1
Location 16,774,642 – 16,774,739
Length 97
Max. P 0.971187
window9457

overview

Window 7

Location 16,774,642 – 16,774,739
Length 97
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 76.42
Mean single sequence MFE -16.05
Consensus MFE -14.74
Energy contribution -14.30
Covariance contribution -0.44
Combinations/Pair 1.18
Mean z-score -2.05
Structure conservation index 0.92
SVM decision value 1.67
SVM RNA-class probability 0.971187
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16774642 97 + 22407834
CAAAAGC-AUCC-ACAAAUGAAAUACAAAACCAAUACAGCAUCCAACAGAUUUU-AGGCGCCCUUUAGGUAAACAGCAACAUAACUCUACUAAGGGCGCU--
.......-....-.........................................-.(((((((((..((((...((........)).)))))))))))))-- ( -16.00)
>DroPse_CAF1 4695 96 + 1
CACAAAUUACAA-ACCAACCAAAAACAAACCAAAUAA----ACCCACAGAUUUC-AGGCGUCCUUUAGGAAAACAGUCACAGAACUUUGCUAGGGGCGCUAC
............-........................----.............-.(((((((((.((.((...(((......))))).))))))))))).. ( -14.80)
>DroEre_CAF1 4283 97 + 1
CAAAAGC-AUCC-ACAAAUGAUAUACAAAACCAAUACAGCAUCCAACAGAUUUU-AGGCGCCCUUUAGGUAAACAGCAACAUAACUCUACUAAGGGCGCU--
.......-....-.........................................-.(((((((((..((((...((........)).)))))))))))))-- ( -16.00)
>DroYak_CAF1 4261 97 + 1
CAAAAGC-AUCC-ACAAAAGAAAUACAAAACCAAUACAGCAUCCAACAGAUUUU-AGGCGCCCUUUAGGUAAACAGCAACAUAACUCUACUAAGGGCGCU--
.......-....-.........................................-.(((((((((..((((...((........)).)))))))))))))-- ( -16.00)
>DroAna_CAF1 4477 85 + 1
--------AUCC-AAAAAUACAAUACAAAUUAUAUA------UCAACAGAUUUUCAGGCGCCCUUUAGGUAAAAAGCAACAGAACCUUACUAAGGGCGCU--
--------....-.......................------..............(((((((((.((((.............))))....)))))))))-- ( -18.72)
>DroPer_CAF1 4905 97 + 1
CACAAAUUACAAAACCAACCAAAAACAAACCAAAUAA----ACCCACAGAUUUC-AGGCGUCCUUUAGGAAAACAGUCACAGAACUUUGCUAGGGGCGCUAC
.....................................----.............-.(((((((((.((.((...(((......))))).))))))))))).. ( -14.80)
>consensus
CAAAAGC_AUCC_ACAAAUGAAAUACAAAACAAAUAC____UCCAACAGAUUUU_AGGCGCCCUUUAGGUAAACAGCAACAGAACUCUACUAAGGGCGCU__
........................................................(((((((((.((.....................))))))))))).. (-14.74 = -14.30 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:20 2006