Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 16,774,358 – 16,774,453 |
Length | 95 |
Max. P | 0.647501 |
Location | 16,774,358 – 16,774,453 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 76.36 |
Mean single sequence MFE | -28.30 |
Consensus MFE | -18.14 |
Energy contribution | -18.03 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.30 |
Mean z-score | -1.30 |
Structure conservation index | 0.64 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.647501 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16774358 95 - 22407834 -------------UUGAAACGUU----UAUAUGCCUUGGUGUGUCCAAUGCGAUACAUAUCGGGAUCCAAUGCGGUGGAUUCCAAAAUGAUGGAUCCACACUUUUUGGGAUC -------------..........----......(((.((((((((((....(((....)))((((((((......)))))))).......))))..))))))....)))... ( -26.90) >DroVir_CAF1 4322 108 - 1 AGGUCAAGAAUCUGUGGAACGCG----ACUAUGCCUUAGUGUGUCCAAUACGAUACAUAUCGGGAUCCAAUGUUGUGGAUUCCAAUAUAAGUGAGCCACACUUCUUGGGAUC ...(((((((..(((((..(((.----...........(((((((......)))))))...((((((((......)))))))).......)))..))))).))))))).... ( -36.20) >DroPse_CAF1 4380 95 - 1 -------------UCGGAACAAG----ACUCUGCCUUGGUGUGUCCAAUGCGGUACAUAUCGGGAUCCAGUCCAGUGGAUUCUAGAAGUAUGCUGCCACACUUCUUCGCAUC -------------...(((.(((----.....((.((((.....)))).))(((((((((.((((((((......))))))))....))))).))))...))).)))..... ( -26.50) >DroWil_CAF1 4184 99 - 1 -------------UUGGAAUAUAUCAAUAUGUGCCUUUGUGUGUCCAAUACGAUACAUAUCGGGAUCCAAUGAGGUGGAUUCCAAUAGAAUACUGCCACAUUUCUUAGGAUC -------------....................((..((((((((......))))))))..))(((((((((.((..(((((.....)))).)..)).)))).....))))) ( -25.30) >DroAna_CAF1 4117 95 - 1 -------------UCGGAACGUG----ACCCUGCCUUGGUGUGUCCAAUGCGGUACAUGUCGGGAUCCAAUGUGGUGGAUUCCAAAAUAAGCGCGCCACACUUCUUGGGAUC -------------..((..((((----((.((((.((((.....)))).)))).....)))((((((((......)))))))).......)))..))............... ( -28.40) >DroPer_CAF1 4590 95 - 1 -------------UCGGAACAAG----ACUCUGCCUUGGUGUGUCCAAUGCGGUACAUAUCGGGAUCCAGUCCAGUGGAUUCUAGAAGUAUGCUGCCACACUUCUUCGCAUC -------------...(((.(((----.....((.((((.....)))).))(((((((((.((((((((......))))))))....))))).))))...))).)))..... ( -26.50) >consensus _____________UCGGAACAUG____ACUCUGCCUUGGUGUGUCCAAUGCGAUACAUAUCGGGAUCCAAUGCGGUGGAUUCCAAAAGAAUGCUGCCACACUUCUUGGGAUC .................................(((.((((((........(((....)))((((((((......)))))))).............))))))....)))... (-18.14 = -18.03 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:19 2006