Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,807,679 – 1,807,771 |
Length | 92 |
Max. P | 0.790460 |
Location | 1,807,679 – 1,807,771 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 82.61 |
Mean single sequence MFE | -21.07 |
Consensus MFE | -15.10 |
Energy contribution | -14.00 |
Covariance contribution | -1.10 |
Combinations/Pair | 1.32 |
Mean z-score | -2.03 |
Structure conservation index | 0.72 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.790460 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1807679 92 - 22407834 GCUAAACUGAAUUGCCUAAGUUUUUCACGCUCGAUUGGUGAAUCAAAAAAUUUCCACAUGCGAUUGAAAAAUCGCUUACAAUUCGAACUGAU .......(((((((.........(((((.(......)))))).................((((((....))))))...)))))))....... ( -18.20) >DroSim_CAF1 4330 92 - 1 GCUAAACCGAAUUGCCUAAGCUUUUCACGCUUGGCAGGUGAAUCAAAAGAUUUCCACAUGCGAUUAAAAAAUCGCUUACAAUUCGAACUAAG .......(((((((((.((((.......))))))).((.(((((....)))))))....((((((....))))))....))))))....... ( -24.00) >DroEre_CAF1 11978 91 - 1 GCUCAACUGAAUUGCCUAAGUUUUUCUCGCUCGACAGGUGAAUUAGGAGAAAUCCACAUCCGGUUGGAAAACC-UUUACAAUUCAAACUGAU ..(((..(((((((...(((.((((((.((.((...((((.....(((....))).)))))))).)))))).)-))..)))))))...))). ( -21.00) >consensus GCUAAACUGAAUUGCCUAAGUUUUUCACGCUCGACAGGUGAAUCAAAAGAUUUCCACAUGCGAUUGAAAAAUCGCUUACAAUUCGAACUGAU .......(((((((......(((((..((((.....))))....)))))..........((((((....))))))...)))))))....... (-15.10 = -14.00 + -1.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:34 2006