| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,773,518 – 16,773,625 |
| Length | 107 |
| Max. P | 0.500000 |
| Location | 16,773,518 – 16,773,625 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 77.36 |
| Mean single sequence MFE | -28.03 |
| Consensus MFE | -13.99 |
| Energy contribution | -13.77 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.50 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16773518 107 + 22407834 UGAUCGAU-UAUUAACGUGU--GAAUUGUAAUACUCAACUAUAGUUACAUGAUUCUGGCUCCUGCCAUCAUGGCGGCCGAAAAGGUGGCCAAGAAUGCUGCCGGAAAGUG ........-......(((((--((.(((((.........)))))))))))).(((((((....((..((.((((.(((.....))).)))).))..)).))))))).... ( -33.40) >DroPse_CAF1 3387 103 + 1 UAAUCUAUCUAUUAACUUGU--AAAUU-----AUUCAACUAUAGUUACAUGAUUCUGGCCCCAGCCAUCAUGACAGCCGAAAAGUUGGCCAAGAAUGCGGCCGGCAAGUG ..............((((((--.((((-----.((((((....))).(((((...((((....)))))))))......))).))))((((........)))).)))))). ( -25.30) >DroGri_CAF1 3371 97 + 1 ----UAAU-UAUUAAU------UUAUUGAAA--CUUAACUUUAGUUAUAUGAUUCUGGCACCAGCUGUUAUGGCAGCUGAAAAACUGCCUAAGAACGCUGCCACCAAGUG ----....-.......------.....(((.--(.((((....))))...).)))(((...((((.(((..(((((.(....).)))))....)))))))...))).... ( -20.20) >DroEre_CAF1 3128 107 + 1 UGAUCGAC-UAUUAACGUGU--GCAUUGUAAUACUCAACUAUAGUUACAUGAUUCUGGCUCCCGCCAUCAUGGCGGCCGAAAAGGUGGCCAAGAAUGCUGCCGGAAAGUG ......((-(.....(((((--(.((((((.........)))))))))))).(((((((....((..((.((((.(((.....))).)))).))..)).)))))))))). ( -33.50) >DroYak_CAF1 3133 107 + 1 UGAUCGAC-UAUUAACGUAU--GAAUUGUAAUACUCAACUAUAGUUACAUGAUUCUGGCUCCUGCCAUCAUGGCGGCCGAAAAGGUGGCCAAGAAUGCUGCCGGAAAGUG .....(((-(((....((((--........))))......)))))).(((..(((((((....((..((.((((.(((.....))).)))).))..)).))))))).))) ( -32.70) >DroMoj_CAF1 3414 98 + 1 ----AAAU-AAUUAAC----UUCUAUUGAAA---UUAACUUUAGUUAUAUGAUUCUGGCACCUGCUGUCAUGGCAGCUGAAAAGUUGCCUAAGAACGCAGCCACCAAGUG ----....-..((((.----(((....))).---)))).................(((...((((..((..(((((((....)))))))...))..))))...))).... ( -23.10) >consensus UGAUCGAU_UAUUAACGUGU__GAAUUGUAA_ACUCAACUAUAGUUACAUGAUUCUGGCUCCUGCCAUCAUGGCAGCCGAAAAGGUGGCCAAGAAUGCUGCCGGAAAGUG ...............................................(((....(((((....(((.....)))(((((......))))).........)))))...))) (-13.99 = -13.77 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:17 2006