Locus 5947

Sequence ID 2L_DroMel_CAF1
Location 16,772,164 – 16,772,271
Length 107
Max. P 0.573142
window9450

overview

Window 0

Location 16,772,164 – 16,772,271
Length 107
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 85.67
Mean single sequence MFE -25.77
Consensus MFE -19.39
Energy contribution -19.03
Covariance contribution -0.36
Combinations/Pair 1.08
Mean z-score -2.22
Structure conservation index 0.75
SVM decision value 0.08
SVM RNA-class probability 0.573142
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16772164 107 - 22407834
AAAACGAACAUAUGAUGAUUGAAGAAUUGUUGCAGUUUUUCGUUAGUGAAAUUGAUGCACAAUUGUUCGAAACCGUUGUACUAGAUC-----------GAGGAACGGAACAAUAUGU--A
.......((((((.....(((((.((((((.(((...(((((....)))))....))))))))).)))))..(((((.(.(......-----------).).)))))....))))))--. ( -26.00)
>DroVir_CAF1 2025 108 - 1
AAAACGAACAUGUGAUGGUUGAAGAAUUGUUGCAGUUUUUCGUUAGUGAAAUUGAUGCACAAUUGUUCGAAACCGUUGUACUGUAUA----------UCGGAAACGGAACAAUAUUU--A
.......(((((..(((((((((.((((((.(((...(((((....)))))....))))))))).)))..))))))..)).)))...----------(((....)))..........--. ( -28.60)
>DroGri_CAF1 1975 99 - 1
AAAACAAACAUGUGAUGGUUGAAGAAUUGUUGCAGUUUUUCGUUAGUGAAAUUGAUGCACAAUUGUUCGAAACCGUUGUACUAAAU---------------------AACAAUAUUUUGA
..........((..(((((((((.((((((.(((...(((((....)))))....))))))))).)))..))))))..))......---------------------..(((....))). ( -22.60)
>DroWil_CAF1 1718 103 - 1
AAAACGAACAUAUGAUGAUUGAAGAAUUGUUGCAGUUUUUCGUUAGUGAAAUUGAUGCAUAAUUGUUCGAAACCGUUGUACUAGAUU-----------CGUA---AGAACAAUAUA---A
...((((((.((..(((.(((((.((((((.(((...(((((....)))))....))))))))).)))))...)))..))...).))-----------))).---...........---. ( -20.20)
>DroMoj_CAF1 1993 119 - 1
AAAACAAACAUGUGAUGGUUGAAGAAUUGUUGCAGUUUUUCGUUAGUGAAAUUGAUGCACAAUUGUUCGAAACCGUUGUACUGUAUAUAUAUUUUGAUCGGAAACGGAACAAUAUUU-GA
....((((((((..(((((((((.((((((.(((...(((((....)))))....))))))))).)))..))))))..)).))).............(((....)))........))-). ( -29.10)
>DroAna_CAF1 1826 106 - 1
AAAACGAACAUGUGAUGAUUGAAGAAUUGUUGCAGUUUUUCGUUAGUGAAAUUGAUGCACAAUUGUUCGAAACCGUUGUACUAGAUU-----------GUGGAACGGAACAAUG-GU--A
........(((((.....(((((.((((((.(((...(((((....)))))....))))))))).)))))..(((((.(((......-----------))).))))).)).)))-..--. ( -28.10)
>consensus
AAAACGAACAUGUGAUGAUUGAAGAAUUGUUGCAGUUUUUCGUUAGUGAAAUUGAUGCACAAUUGUUCGAAACCGUUGUACUAGAUA___________CGGAAACGGAACAAUAUUU__A
..........((..(((.(((((.((((((.(((...(((((....)))))....))))))))).)))))...)))..))........................................ (-19.39 = -19.03 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:13 2006