Locus 5945

Sequence ID 2L_DroMel_CAF1
Location 16,771,560 – 16,771,663
Length 103
Max. P 0.660578
window9448

overview

Window 8

Location 16,771,560 – 16,771,663
Length 103
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 80.75
Mean single sequence MFE -15.12
Consensus MFE -12.50
Energy contribution -12.50
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.30
Structure conservation index 0.83
SVM decision value 0.27
SVM RNA-class probability 0.660578
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16771560 103 + 22407834
CUCAUCCCAUCAAUCCGCACCAUUUCCCCCU-AAAAAAA----------AUAUGAUAUCUAGUACAACGGUUUCGAGCAACUGUGUAUUAACUUCACCAACGAGAAGUUGCAAC
................(((............-.......----------..........(((((((.(((((......))))))))))))(((((........))))))))... ( -15.50)
>DroPse_CAF1 1303 112 + 1
CUCACCUCACGAAUCCACUCCAAUCCAAUCCAACUCAAAAUCGGUACGAACAUAC--UAUAGUACAACGGUUUCGAGCAACUGUGUAUUAACUUCACCAACGAGAAGUUGCAAC
.......(((((......)).............(((.((((((((((........--....))))..)))))).))).....)))...(((((((........))))))).... ( -16.10)
>DroSec_CAF1 1179 101 + 1
CUCAUCCCAUCAAUCCGCACCAUUUCCCC---ACAAAAA----------AUAUGAUAUCUAGUACAACGGUUUCGAGCAACUGUGUAUUAACUUCACCAACGAGAAGUUGCAAC
................(((..........---.......----------..........(((((((.(((((......))))))))))))(((((........))))))))... ( -15.50)
>DroEre_CAF1 1175 99 + 1
CUCAUCCCAUCAAUCCGCACCAUUUCCCCC-----AAAA----------AUAUGACAUCUAGUACAACGGUUUCGAGCAACUGUGUAUUAACUUCACCAACGAGAAGUUGCAAC
................(((...........-----....----------..........(((((((.(((((......))))))))))))(((((........))))))))... ( -15.50)
>DroWil_CAF1 1254 96 + 1
-AAAUCCUAUUAUUCC-CUCCACACC------ACCAAAU----------AUACCAAAUAUAGUACAACGGUUUCGAGCAACUGUGUAUUAACUUCACCAACGAGAAGUUGCAAC
-...............-.........------.......----------..........(((((((.(((((......))))))))))))(((((........)))))...... ( -12.60)
>DroAna_CAF1 1217 100 + 1
CUCAUCGCACCAAUCCUUGCCAAUUCCUA----CAAAAA----------AAAUGAUAUCUAGUACAACGGUUUCGAGCAACUGUGUAUUAACUUCACCAACGAGAAGUUGCAAC
......(((....................----......----------..........(((((((.(((((......))))))))))))(((((........))))))))... ( -15.50)
>consensus
CUCAUCCCAUCAAUCCGCACCAUUUCCCC___ACAAAAA__________AUAUGAUAUCUAGUACAACGGUUUCGAGCAACUGUGUAUUAACUUCACCAACGAGAAGUUGCAAC
............................................................((((((.(((((......)))))))))))((((((........))))))..... (-12.50 = -12.50 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:11 2006