Locus 5943

Sequence ID 2L_DroMel_CAF1
Location 16,766,945 – 16,767,052
Length 107
Max. P 0.951901
window9445

overview

Window 5

Location 16,766,945 – 16,767,052
Length 107
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 78.09
Mean single sequence MFE -27.18
Consensus MFE -24.96
Energy contribution -24.93
Covariance contribution -0.03
Combinations/Pair 1.09
Mean z-score -1.92
Structure conservation index 0.92
SVM decision value 1.42
SVM RNA-class probability 0.951901
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16766945 107 + 22407834
-----CUA-AUGUCAUAC-------UCUUACCAUUACAGAUCUGCUGGAGAAGGCUCGUGUCAUCUCCCAGCAGUCCCUGGAGCGUUCCUACCACAUCUUCUACCAGAUCAUGUCUGGCU
-----.((-(((..(...-------...)..)))))(((..((((((((((.(((....))).))).)))))))...))).......................((((((...)))))).. ( -28.20)
>DroVir_CAF1 37337 95 + 1
-----CAU-AC-------------------CUUUUACAGAUCUGUUGGAGAAGGCUCGUGUCAUCUCUCAGCAGUCCCUGGAGCGCUCCUACCAUAUCUUCUACCAGAUUAUGUCCGGUG
-----..(-((-------------------(.....(((..((((((((((.(((....))).)))).))))))...)))............(((((((......))).))))...)))) ( -24.60)
>DroGri_CAF1 34934 103 + 1
-----UCU-CU----UUU-------UUCUCUUCUCUCAGAUCUGUUGGAGAAGGCUCGUGUCAUCUCUCAGCAGUCGUUGGAGCGUUCCUACCACAUCUUCUACCAGAUCAUGUCUGGUG
-----...-..----...-------.......((((..((.((((((((((.(((....))).)))).))))))))...))))..................((((((((...)))))))) ( -29.00)
>DroWil_CAF1 47793 114 + 1
-----CUA-AUGAUUUUCCUUCUUGUCUCUCUCUUACAGAUCUGUUGGAGAAGGCUCGUGUCAUCUCUCAGCAAUCUCUGGAGCGUUCUUACCACAUUUUCUACCAGAUCAUGUCUGGCU
-----...-...................(.((((...((((.(((((((((.(((....))).)))).)))))))))..)))).)..................((((((...)))))).. ( -26.00)
>DroMoj_CAF1 37036 103 + 1
-----CAU-AU----UUC-------AUCUACUUUAACAGAUCUGUUGGAGAAGGCUCGUGUCAUCUCCCAGCAGUCGCUGGAGCGCUCUUACCACAUCUUCUACCAGAUCAUGUCUGGUG
-----...-..----...-------...........(((..((((((((((.(((....))).))).)))))))...))).....................((((((((...)))))))) ( -28.50)
>DroAna_CAF1 32448 110 + 1
UAUGACUAAACCU--CUC-------UCUUUU-CUUACAGAUCUGCUGGAGAAGGCCCGUGUCAUCUCCCAGCAGUCCCUGGAGCGUUCCUACCACAUCUUCUACCAGAUCAUGUCUGGCU
........(((((--(..-------......-....(((..((((((((((.(((....))).))).)))))))...)))))).)))................((((((...)))))).. ( -26.80)
>consensus
_____CUA_AU____UUC_______UCUUACUCUUACAGAUCUGUUGGAGAAGGCUCGUGUCAUCUCCCAGCAGUCCCUGGAGCGUUCCUACCACAUCUUCUACCAGAUCAUGUCUGGCG
....................................(((..((((((((((.(((....))).)))).))))))...))).......................((((((...)))))).. (-24.96 = -24.93 +  -0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:08 2006