Locus 5942

Sequence ID 2L_DroMel_CAF1
Location 16,766,360 – 16,766,452
Length 92
Max. P 0.677977
window9444

overview

Window 4

Location 16,766,360 – 16,766,452
Length 92
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 79.27
Mean single sequence MFE -18.00
Consensus MFE -10.24
Energy contribution -10.11
Covariance contribution -0.14
Combinations/Pair 1.10
Mean z-score -1.85
Structure conservation index 0.57
SVM decision value 0.30
SVM RNA-class probability 0.677977
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16766360 92 + 22407834
---------CCAUCU--UUCUUG--GCCA----AAAAAACAGACCUACUCCGGUCUUUUCUGCGUUGCCAUCAAUCCUUACAAGCGUUACCCCGUGUAUACCAACCGUU
---------......--....((--((..----.......(((((......)))))..........)))).............(((......))).............. ( -11.71)
>DroPse_CAF1 34692 100 + 1
CAUC-UCUAUCCACC--CUCUUGAUGCGU----G--AAACAGACCUACUCCGGUCUUUUCUGCGUUGCCAUCAAUCCUUACAAGCGCUACCCCGUGUAUACCAACCGUU
....-..........--...(((((((((----(--(((.(((((......))))))))).)))....)))))).........((((......))))............ ( -17.90)
>DroGri_CAF1 34330 98 + 1
-A--UUCUUUCCACG--AUGAUG--GCAA----AAAAAAUAGACCUACUCUGGUCUUUUCUGCGUUGCCAUCAAUCCUUAUAAGCGCUACCCCGUCUAUACCAACCGUU
-.--........(((--.(((((--((((----.......(((((......)))))........))))))))).....((((..((......))..)))).....))). ( -25.66)
>DroWil_CAF1 47199 95 + 1
---------UCAU-A--CUUUUCAUACAUUGACA--ACGUAGACCUACUCAGGUCUUUUCUGCGUUGCCAUCAAUCCUUACAAGCGCUACCCUGUGUAUACCAACCGUU
---------....-.--..........(((((((--((((((((((....)))))).....))))))...)))))........((((......))))............ ( -18.10)
>DroMoj_CAF1 36451 99 + 1
-AUUUUCUCUCCGCUUCGUUAUG--GCGU-------AUAUAGACCUACUCCGGUCUUUUCUGCGUUGCCAUCAAUCCUUACAAGCGCUACCCCGUCUAUACUAACCGUU
-..........(((((.((.(((--((((-------(...(((((......)))))....)))...)))))........)))))))....................... ( -16.70)
>DroPer_CAF1 33070 100 + 1
CAUC-UCUAUCCACC--CUCUUGAUGCGU----G--AAACAGACCUACUCCGGUCUUUUCUGCGUUGCCAUCAAUCCUUACAAGCGCUACCCCGUGUAUACCAACCGUU
....-..........--...(((((((((----(--(((.(((((......))))))))).)))....)))))).........((((......))))............ ( -17.90)
>consensus
_A___UCU_UCCACC__CUCUUG__GCGU____A__AAACAGACCUACUCCGGUCUUUUCUGCGUUGCCAUCAAUCCUUACAAGCGCUACCCCGUGUAUACCAACCGUU
........................................(((((......))))).....(((((................)))))...................... (-10.24 = -10.11 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:07 2006