Locus 5940

Sequence ID 2L_DroMel_CAF1
Location 16,765,087 – 16,765,207
Length 120
Max. P 0.963226
window9440

overview

Window 0

Location 16,765,087 – 16,765,207
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 90.33
Mean single sequence MFE -37.88
Consensus MFE -32.28
Energy contribution -32.70
Covariance contribution 0.42
Combinations/Pair 1.18
Mean z-score -2.58
Structure conservation index 0.85
SVM decision value 1.55
SVM RNA-class probability 0.963226
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16765087 120 - 22407834
AGCAUAGUAACGCUGACGCAGAUUGUGCAAAACGCAAGGAGUGUUAAGCACGGUCAUGUCGGCCAUAUCUUCAAUUUUUUCGAAUUUUGGUGGAUUGACUUUUUCCACCUUCUCGGAUUU
...........(((((((..((((((((..(((((.....)))))..)))))))).)))))))...............(((((.....((((((.........))))))...)))))... ( -38.00)
>DroVir_CAF1 35375 120 - 1
AUGAUAAUAACGCUGGCGCAGAUUGUGCAGCACGCAAGGUGUGUUCAGCACGGUCAUGUCAGCCAUAUCUUCAAUUUUUUCGAAUUUUGGUGGAUUCACUUUCUCCACCUUCUCGGAUUU
.(((..(((..(((((((..(((((((((((((((...)))))))..)))))))).)))))))..)))..))).....(((((.....((((((.........))))))...)))))... ( -41.10)
>DroGri_CAF1 32950 120 - 1
AGCAUAGUAACGCUGGCGCAGAUUGUGCAGCACGCAAGGUGUGUUCAGCACGGUCAUGUCAGCCAUAUCUUCUAGUUUUUCGAAUUUUGGUGGAUUCACUUUCUCCACCUUAUCGGCUUU
(((........(((((((..(((((((((((((((...)))))))..)))))))).))))))).................(((.....((((((.........))))))...)))))).. ( -39.20)
>DroWil_CAF1 45810 120 - 1
AGCAUAAUAACGUUGACGCAAAUUGUGCAGGACACAGGGUGUGUUCAAGACAGUCAUGUCGGCCAUAUCUUCAAUUUUUUCGAAUUUUGGUGGAUUCACUUUUUCCACCUUCUCGGAUUU
.(((((((..((....))...))))))).((((((.....))))))..((((....))))..................(((((.....((((((.........))))))...)))))... ( -31.60)
>DroMoj_CAF1 35174 120 - 1
AUGAUAAUAGCGCUGGCGCAGAUUGUGCAGCACGCAAGGUGUGUUCAGCACGGUCAUGUCAGCCAUAUCUUCAAUUUUUUCGAAUUUCGGUGGAUUGACUUUUUCCACCUUCUCGGAUUU
.(((..(((..(((((((..(((((((((((((((...)))))))..)))))))).)))))))..)))..))).....(((((.....((((((.........))))))...)))))... ( -42.00)
>DroPer_CAF1 31823 120 - 1
AGCAUAGUAACGCUGGCGCAAAUUGUGCAACACGCAGGGUGUGUUCAGCACGGUCAUAUCGGCCAUGUCUUCAAGUUUUUCGAAUUUCGGUGGAUUGACUUUCUCCACCUUCUCGGAUUU
.((((......(((((((((..(((((.....)))))..)))).)))))..((((.....))))))))..........(((((.....((((((.........))))))...)))))... ( -35.40)
>consensus
AGCAUAAUAACGCUGGCGCAGAUUGUGCAGCACGCAAGGUGUGUUCAGCACGGUCAUGUCAGCCAUAUCUUCAAUUUUUUCGAAUUUUGGUGGAUUCACUUUCUCCACCUUCUCGGAUUU
...........(((((((..(((((((((((((((...)))))))..)))))))).)))))))...............(((((.....((((((.........))))))...)))))... (-32.28 = -32.70 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:03 2006