Locus 5938

Sequence ID 2L_DroMel_CAF1
Location 16,761,251 – 16,761,345
Length 94
Max. P 0.967613
window9437

overview

Window 7

Location 16,761,251 – 16,761,345
Length 94
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 91.68
Mean single sequence MFE -16.08
Consensus MFE -15.02
Energy contribution -14.62
Covariance contribution -0.40
Combinations/Pair 1.11
Mean z-score -1.54
Structure conservation index 0.93
SVM decision value 1.61
SVM RNA-class probability 0.967613
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16761251 94 - 22407834
GGUCCGUCUUGAAUAUUCAAUAUUUAACAAUG------AUUAUUGUGUAGCGGAAAAAGAAUACGCAAAAAAACAACUCAUGAAUUCGGACAAAAACAAC
.(((((((.(((.(((.(((((.(((....))------).))))).)))(((...........)))...........))).))...)))))......... ( -16.80)
>DroSec_CAF1 24714 91 - 1
GGUCCGUCUUAAAUAUUCAAUAUUUAACAAUG------AUUAUUGUGUAGCGGAA-AAGAAUACGCAAA-AAACAACUCAUGAAUUCGGACAAA-ACAAC
.(((((..((((((((...))))))))..(((------(...((((...(((...-.......)))...-..)))).)))).....)))))...-..... ( -15.50)
>DroSim_CAF1 25315 94 - 1
GGUCCGUCUUAAAUAUUCAAUAUUUAACAAUG------AUUAUUGUGUAGCGGAAAAAGAAUACGCAAAAAAACAACUCAUGAAUUCGGACAAAAACAAA
.(((((..((...(((.(((((.(((....))------).))))).)))(((...........)))................))..)))))......... ( -15.00)
>DroEre_CAF1 24054 93 - 1
GGUUCGUCUUAAAUAUUCAAUAUUUAACAAUG------AUUAUUGUGUAGCGGAAAAAGAAUACGCAAA-AAACAUCUCAUGAAUUCGGACGAAAACAAC
..(((((((.....(((((.......(((((.------...)))))...(((...........)))...-..........)))))..)))))))...... ( -15.90)
>DroYak_CAF1 25682 99 - 1
GGUUCGUGUUGAAUAUUCAAUAUUUAACAAUAUUUAACAUUAUUGUGUAGCGGAAAGGGAAUACGCAAA-AAACAUCUCAUGAAUUCGGACAAAAACAAC
.((((((((((((((((...........)))))))))))...(((((((............))))))).-................)))))......... ( -17.20)
>consensus
GGUCCGUCUUAAAUAUUCAAUAUUUAACAAUG______AUUAUUGUGUAGCGGAAAAAGAAUACGCAAA_AAACAACUCAUGAAUUCGGACAAAAACAAC
.(((((........(((((.......((((((........))))))...(((...........)))..............))))).)))))......... (-15.02 = -14.62 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:00 2006