Locus 5937

Sequence ID 2L_DroMel_CAF1
Location 16,754,375 – 16,754,465
Length 90
Max. P 0.932010
window9436

overview

Window 6

Location 16,754,375 – 16,754,465
Length 90
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 79.29
Mean single sequence MFE -25.68
Consensus MFE -18.40
Energy contribution -18.15
Covariance contribution -0.25
Combinations/Pair 1.32
Mean z-score -2.07
Structure conservation index 0.72
SVM decision value 1.22
SVM RNA-class probability 0.932010
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16754375 90 - 22407834
AGUAACAAGG-----UAUUUGA-----CAUCCUUUCAGAUGAUGCUCUUUUUCUGUGGCGGAUUCAUUAAGAGGAUGCAGCAGAAGGAGCAGGCAAAGUU
..........-----..((((.-----((((......)))).((((((..((((((.(((..(((.....)))..))).))))))))))))..))))... ( -25.20)
>DroSec_CAF1 17766 90 - 1
UGUAACAAGG-----UAUUUGG-----UAACUUUCCAGAUGACGCUCUUUUUCUGUGGCGGAUUCAUUAAGAAGAUGCAGCAGAAGGAGCAGGCGAAGUU
...(((....-----(((((((-----.......))))))).((((((((((((((.(((..(((.....)))..))).))))))))))..))))..))) ( -28.90)
>DroSim_CAF1 17764 90 - 1
AGUAACAAGG-----UAUUUGG-----AAUCCUUCCAGAUGACUCUCUUUUUCUGCGGCGGAUUCAUUAAGAAGAUGCAGCAGAAGGAGCAGGCGAAGUU
.((....((.-----(((((((-----(.....)))))))).))((((((((((((.(((..(((.....)))..))).)))))))))).))))...... ( -28.60)
>DroEre_CAF1 17812 90 - 1
CGUAAUUAGG-----UAUUUGG-----UUUACUUCCAGAUGACCCUCUUUUUCUGUGGCGGAUUCAUUAAGAAGAUGCAGCAGAAGGAGAAGGCCAAGUU
........((-----(((((((-----.......))))))).((.(((((((((((.(((..(((.....)))..))).))))))))))).))))..... ( -29.50)
>DroYak_CAF1 17761 90 - 1
AGUAAUAAGG-----UAUUUGG-----UAUCCUUCCAGAUGACUCUCUUUUUCUGUGGCGGAUUCAUUAAAAAGAUGCAACAGAAGGAGCAGGCGAAGUU
.((....((.-----(((((((-----.......))))))).))((((((((((((.(((..((.......))..))).)))))))))).))))...... ( -21.20)
>DroPer_CAF1 18983 99 - 1
-UCUAUUAUAUUUAUCAUUUGAUUUUCCUCUUUUCCAGAUGACUCUAUUCUUUUGUGGAGGCUUUAUCAAGCGCAUGCAGCAGAAGGAGAAAAGCAAAUU
-...............(((((.(((((..(((((.(.(((((((((((......))))))...)))))..((....)).).)))))..))))).))))). ( -20.70)
>consensus
AGUAACAAGG_____UAUUUGG_____UAUCCUUCCAGAUGACUCUCUUUUUCUGUGGCGGAUUCAUUAAGAAGAUGCAGCAGAAGGAGCAGGCGAAGUU
...............(((((((............)))))))...((((((((((((.(((..(((.....)))..))).)))))))))).))........ (-18.40 = -18.15 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:59 2006