| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,752,855 – 16,752,970 |
| Length | 115 |
| Max. P | 0.527389 |
| Location | 16,752,855 – 16,752,970 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 73.02 |
| Mean single sequence MFE | -32.19 |
| Consensus MFE | -17.07 |
| Energy contribution | -17.63 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.53 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.527389 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16752855 115 - 22407834 GGUUCGGCUUCCUGGAGAUUGUGAGCCUGCCAGCUGGGGAAUGGCUUCAAGGCUGGACCCUUGCUGGAGGUAUCUGAAUAAAAUACAUCAAAAUAGAACGCUUAAUAAAAUACAA .((((((((..(........)..))))..(((((.((((..(((((....)))))..)))).)))))............................))))................ ( -33.30) >DroSec_CAF1 16258 115 - 1 GGUUCGGCUUCCUGGAGAUUGUGAGCCUGCCAGCUGGGGAAUGGCUUCAAGGCUGGACCCUUGUUGGACGUAUCUGCAUAAAAUAUAUUAAAAUAGAACGCUUAAUAAAAUACAA .((((((((..(........)..))))..(((((.((((..(((((....)))))..)))).)))))............................))))................ ( -30.90) >DroEre_CAF1 16295 115 - 1 GGUUCGGCCUCCUGAAGAUUGUGGGCCUGCCAGCUGGGGAACGGCUUCAAGGCAGGACCCUUGCUGGAUGUAUCUGUAUAAAAUAGAUCAAAAUAGAACGAAUAAUUAAAUGCAA .((((((((..(........)..))))..(((((.((((..(.(((....))).)..)))).))))).((.((((((.....)))))))).....))))................ ( -38.20) >DroWil_CAF1 26145 106 - 1 GGCUCUGGUUCCAAAAGGCUGUGAGCCUCCCAGCUGGGAAAAGGUGUCAGGGCAGGCAUAUUUGUGGAGUUAUCUGAAAAAUG----UUCGAAGAGAU--GUUAAUUA---GCAA .(((((((..((....(((.....)))((((....))))...))..)))))))..((((((((..(((....)))...)))))----)((.....)).--........---)).. ( -28.60) >DroYak_CAF1 16245 115 - 1 GGCUCGGCUUCCUGGAGAUUGUGAGCCUGCCAGCUGGGGAACGGCUUCAAGGCUGGACCCUUGCUGGACGUAUCUGUAUAAAAUACAUCAAAAUAGAACGCACAAUUAAAUACAA ((((((.(((....)))....))))))..(((((.((((..(((((....)))))..)))).))))).(((.(((((...............))))))))............... ( -37.76) >DroAna_CAF1 18068 96 - 1 GGUUCCGUUUCCUGCAAACUAUGAGCUUGCCAGCUGGGGAAGGGCUUCAGGGCGGGUUUAUCGGUGGUGGUAUCUAUAAGAAAGAAAUAAAUAUA-------------------U ......((((((..(...(.(((((((((((..((((((.....))))))))))))))))).)...)..)..((.....))..))))).......-------------------. ( -24.40) >consensus GGUUCGGCUUCCUGGAGAUUGUGAGCCUGCCAGCUGGGGAACGGCUUCAAGGCUGGACCCUUGCUGGAGGUAUCUGUAUAAAAUACAUCAAAAUAGAACGCUUAAUUAAAUACAA ((((((.(((....)))....))))))..(((((.((((....(((....)))....)))).)))))................................................ (-17.07 = -17.63 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:57 2006