| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,747,352 – 16,747,450 |
| Length | 98 |
| Max. P | 0.801265 |
| Location | 16,747,352 – 16,747,450 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 85.12 |
| Mean single sequence MFE | -30.33 |
| Consensus MFE | -24.02 |
| Energy contribution | -23.40 |
| Covariance contribution | -0.62 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.43 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.801265 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16747352 98 + 22407834 -AAACUGGCCAAAAAGAAGCGGUUGAAUCCUCCGAGUAUUCACUUCGCUCGGGCCAGUUUAGCGCAAAAUUGAUGUUGGACUUUUGGGUCUGGCAAAUU -(((((((((.....((.((((.(((((.(.....).)))))..)))))).))))))))).............(((..((((....))))..))).... ( -33.70) >DroSec_CAF1 10808 98 + 1 -AAACUGGCCAAAAAGAAGCGGUUGAAUCCUCCGAGCAUUCACUUCGCUCGGGCCAGUUUAGCGCAAAAUUGAUGUUGGACUUUUGGGUCUGGCAAAUU -(((((((((..........((......))..(((((.........)))))))))))))).............(((..((((....))))..))).... ( -33.80) >DroSim_CAF1 10845 99 + 1 AAAACUGGCCAAAAAGAAGCGGUUGAAUCCUCCGAGUAUUCACUUCGCUCUGGCCAGUUUAGCGCAAAAUUGAUGUUGGACUUUUGGGUCUGGCAAAUU .((((((((((....((.((((.(((((.(.....).)))))..)))))))))))))))).............(((..((((....))))..))).... ( -33.80) >DroEre_CAF1 10998 95 + 1 -AAACUGGCCAAAAAGCAGCGGUUGAAUC---GGAGUAUUCCCCUCACUCCGGCCAGUUUAGCGCAAAAUUGAUGUUGGACUUUCGGGUCUGGCAAAUU -(((((((((....(((....))).....---(((((.........)))))))))))))).............(((..((((....))))..))).... ( -31.50) >DroYak_CAF1 10937 95 + 1 -AAACUGCCCAAAAAGAUGCGGUUGAAUC---UGAGUAUUCCCCUCACUCGGGCCAGUUUAGCGCAAAAUUGAUGUUGGACUUUUGGGUCUGGCAAAUU -(((((((((....((((........)))---)((((.........))))))).)))))).............(((..((((....))))..))).... ( -26.60) >DroAna_CAF1 10945 86 + 1 -AAACUACCCAAACGGUAUCUAACAAAUCCUACAAG------------UUGGGCUAGUUUAGCGCAAAAUUGAUGUUGGACUUUUGGGUCUGGCAAAUU -(((((((((((...(((............)))...------------))))).)))))).............(((..((((....))))..))).... ( -22.60) >consensus _AAACUGGCCAAAAAGAAGCGGUUGAAUCCUCCGAGUAUUCACUUCGCUCGGGCCAGUUUAGCGCAAAAUUGAUGUUGGACUUUUGGGUCUGGCAAAUU .(((((((((.....((.....))........(((((.........)))))))))))))).............(((..((((....))))..))).... (-24.02 = -23.40 + -0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:55 2006