Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 16,745,257 – 16,745,374 |
Length | 117 |
Max. P | 0.718697 |
Location | 16,745,257 – 16,745,374 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.11 |
Mean single sequence MFE | -46.15 |
Consensus MFE | -26.18 |
Energy contribution | -27.90 |
Covariance contribution | 1.72 |
Combinations/Pair | 1.10 |
Mean z-score | -2.04 |
Structure conservation index | 0.57 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.718697 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16745257 117 - 22407834 CGGCGCU---GCGGGCAGACAUCAUCUAAAGCGCGGCUGCAUCAUUUGCAGCAUAUUGGGAUGUCCUUGCAGCAUCACGCCCAUUCCAGGCAUUGCCAUCGCUCCUGCUGGUAAGGCACC .((((((---(((((..((((((..((((......((((((.....))))))...)))))))))))))))))).....(((.......)))...)))...(((((....))...)))... ( -43.80) >DroVir_CAF1 11809 115 - 1 GGGCGCAGCAGCGGGCAGGCAUCAUCUGAAACGCGGCUGCAUCAUCUGCAACAUAUUCGGAUGUCCUGGCAGCAUUACGCUCAUGCCCGGCAUAGGCAUCGCGCCAGCAGGCAAG----- ..(((((((.(((..((((.....))))...))).))))).....((((...........(((.((.((((((.....))...)))).))))).(((.....))).))))))...----- ( -42.20) >DroPse_CAF1 10818 117 - 1 CGGCGCU---GCGGGCAGACAUCAUCUGAAUCGCGGCUGCAUCAUCUGCAGCAUAUUCGGAUGACCCUGCAGCAUUACGCCCAUGCCAGGCAUAUGCAUGGCCCCCGCAGGCAGUGCUCC .((((((---((((((((...((((((((((....((((((.....))))))..))))))))))..)))).((.....))))..((((.((....)).))))........)))))))).. ( -52.10) >DroGri_CAF1 9521 112 - 1 CGGCGCA---CCGGGUAUGCAUCAUCUAAAUCGCGGCUGCAUCAUCUGCAACAUAUUCGGAUGACCCGGCAACAUGACACCCAUGCCUGGCAUUGGCAUCGCACCAGCGGGCAAA----- ..((((.---(((((((((..((((.......(..((((..(((((((.........)))))))..))))..)))))....))))))))).....)).((((....))))))...----- ( -33.71) >DroMoj_CAF1 9704 112 - 1 UGGCGCA---GCGGGCAGGCAUCAUCUGAAGCGUGGCUGCAUCAUCUGCAGCAUAUUCGGAUGGCCAGGCAGCAUUACGCUCAUGCCCGGCAUCGGCAUAGCACCCGCGGGCAAG----- ..((.(.---(((((...((..((((((((.....((((((.....))))))...))))))))(((.((((((.....))...)))).))).........)).)))))).))...----- ( -49.10) >DroAna_CAF1 8631 117 - 1 CGGCGCU---GCCGGCAAACAUCAUCUGAAUCGUGGCUGCAUCAUCUGCAGCAUGUUCGGAUGACCCGGCAGCAUUACUCCCAUUCCGUGCAUGGGCAUGGCUCCAGCGGGUAGAGUGCC .((((((---(((((......(((((((((.((((.(((((.....)))))))))))))))))).))))))))....(((((....(((((....)))))((....))))).))...))) ( -56.00) >consensus CGGCGCA___GCGGGCAGACAUCAUCUGAAUCGCGGCUGCAUCAUCUGCAGCAUAUUCGGAUGACCCGGCAGCAUUACGCCCAUGCCAGGCAUAGGCAUCGCACCAGCGGGCAAG_____ .((((.....((..((.....(((((((((.....((((((.....))))))...)))))))))....)).))....))))..((((..((....))...((....)).))))....... (-26.18 = -27.90 + 1.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:54 2006