Locus 5932

Sequence ID 2L_DroMel_CAF1
Location 16,740,605 – 16,740,711
Length 106
Max. P 0.996415
window9429 window9430

overview

Window 9

Location 16,740,605 – 16,740,711
Length 106
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 87.90
Mean single sequence MFE -32.15
Consensus MFE -23.68
Energy contribution -23.68
Covariance contribution 0.00
Combinations/Pair 1.12
Mean z-score -2.97
Structure conservation index 0.74
SVM decision value 0.06
SVM RNA-class probability 0.565186
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16740605 106 + 22407834
CUUUU-UGCUAAAGUAAUGCUACCAUAAGUGCUCCGCCUACCACCAAUCAUGCUGGUGGCGCAUCCAGCGCACCACCAAGUGGUCCGCCAGAUGCUCAGCAACACCA
....(-(((....))))((((..............(((.((((.((....)).)))))))(((((..(((.(((((...))))).)))..)))))..))))...... ( -33.40)
>DroPse_CAF1 6241 106 + 1
UUUUU-UGGUAAAGUAAUGCUACCAUAAGUGCUCCACCCACCACCAAUCAUGCUGGUGGCGCAUCAAGCGCACCACCAAGUGGCCCGCCCGAUGCACAACAGCAACA
.....-(((((.(....)..)))))....((((....((((((.((....)).)))))).(((((..(((..((((...))))..)))..))))).....))))... ( -33.10)
>DroEre_CAF1 4234 106 + 1
CUUUU-UGCUAAAGUAAUGCUACCAUAAGUGCUCCGCCAACCACCAAUCAUGCUGGUGGCACAUCCAGCGCGCCACCAAGUGGUCCGCCCGAUGCUCAGCAACACCA
....(-((((.......((((((((...(((.................)))..))))))))((((..(((.(((((...))))).)))..))))...)))))..... ( -29.63)
>DroYak_CAF1 4253 106 + 1
CUUUU-UACUAAAGUAAUGCUACCAUAAGUGCUCCGCCUACCACCAAUCAUGCUGGUGGCGCAUCCAGUGCACCACCAAGUGGCCCGCCCGAUGCUCAGCAACACCA
....(-(((....))))((((..............(((.((((.((....)).)))))))(((((..(((..((((...))))..)))..)))))..))))...... ( -29.10)
>DroAna_CAF1 3708 107 + 1
AUUCCCCCAUGUAGUAAUGCAACCAUAAGUGCUCCGCCCACCACCAACCAUGCUGGUGGCGUACCUGGCGCACCACCAAGUGGCCCGCCAGAUGCCCAGCAACCACC
.........((((....))))........((((..(((.((((.((....)).)))))))(((.((((((..((((...))))..)))))).)))..))))...... ( -34.60)
>DroPer_CAF1 4318 106 + 1
UUUUU-UGGUAAAGUAAUGCUACCAUAAGUGCUCCACCCACCACCAAUCAUGCUGGUGGCGCAUCAAGCGCACCACCAAGUGGCCCGCCCGAUGCACAACAGCAACA
.....-(((((.(....)..)))))....((((....((((((.((....)).)))))).(((((..(((..((((...))))..)))..))))).....))))... ( -33.10)
>consensus
CUUUU_UGCUAAAGUAAUGCUACCAUAAGUGCUCCGCCCACCACCAAUCAUGCUGGUGGCGCAUCCAGCGCACCACCAAGUGGCCCGCCCGAUGCUCAGCAACAACA
.............((...(((((((...(((.................)))..)))))))(((((..(((..((((...))))..)))..)))))...))....... (-23.68 = -23.68 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 0

Location 16,740,605 – 16,740,711
Length 106
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 87.90
Mean single sequence MFE -46.37
Consensus MFE -40.52
Energy contribution -40.25
Covariance contribution -0.27
Combinations/Pair 1.29
Mean z-score -3.69
Structure conservation index 0.87
SVM decision value 2.69
SVM RNA-class probability 0.996415
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16740605 106 - 22407834
UGGUGUUGCUGAGCAUCUGGCGGACCACUUGGUGGUGCGCUGGAUGCGCCACCAGCAUGAUUGGUGGUAGGCGGAGCACUUAUGGUAGCAUUACUUUAGCA-AAAAG
((((((((((..(((((..(((.(((((...))))).)))..)))))(((((((.((....)).)))).)))...........))))))))))........-..... ( -48.70)
>DroPse_CAF1 6241 106 - 1
UGUUGCUGUUGUGCAUCGGGCGGGCCACUUGGUGGUGCGCUUGAUGCGCCACCAGCAUGAUUGGUGGUGGGUGGAGCACUUAUGGUAGCAUUACUUUACCA-AAAAA
(((((((((.((((((((((((.(((((...))))).))))))))((.((((((.((....)).))))))))...))))..)))))))))...........-..... ( -48.20)
>DroEre_CAF1 4234 106 - 1
UGGUGUUGCUGAGCAUCGGGCGGACCACUUGGUGGCGCGCUGGAUGUGCCACCAGCAUGAUUGGUGGUUGGCGGAGCACUUAUGGUAGCAUUACUUUAGCA-AAAAG
((((((((((..(((((.(((((.((((...))))).)))).)))))(((((((.((....)).))).))))...........))))))))))........-..... ( -40.90)
>DroYak_CAF1 4253 106 - 1
UGGUGUUGCUGAGCAUCGGGCGGGCCACUUGGUGGUGCACUGGAUGCGCCACCAGCAUGAUUGGUGGUAGGCGGAGCACUUAUGGUAGCAUUACUUUAGUA-AAAAG
((((((((((..(((((.((.(.(((((...))))).).)).)))))(((((((.((....)).)))).)))...........))))))))))........-..... ( -42.50)
>DroAna_CAF1 3708 107 - 1
GGUGGUUGCUGGGCAUCUGGCGGGCCACUUGGUGGUGCGCCAGGUACGCCACCAGCAUGGUUGGUGGUGGGCGGAGCACUUAUGGUUGCAUUACUACAUGGGGGAAU
......((((..((((((((((.(((((...))))).)))))))).((((((((((...)))))))))).))..))))((((((............))))))..... ( -49.70)
>DroPer_CAF1 4318 106 - 1
UGUUGCUGUUGUGCAUCGGGCGGGCCACUUGGUGGUGCGCUUGAUGCGCCACCAGCAUGAUUGGUGGUGGGUGGAGCACUUAUGGUAGCAUUACUUUACCA-AAAAA
(((((((((.((((((((((((.(((((...))))).))))))))((.((((((.((....)).))))))))...))))..)))))))))...........-..... ( -48.20)
>consensus
UGGUGUUGCUGAGCAUCGGGCGGGCCACUUGGUGGUGCGCUGGAUGCGCCACCAGCAUGAUUGGUGGUGGGCGGAGCACUUAUGGUAGCAUUACUUUAGCA_AAAAG
...(((((((..((((((((((.(((((...))))).))))))))))(((((((.((....)).)))).)))...........)))))))................. (-40.52 = -40.25 +  -0.27)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:53 2006