Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 16,738,823 – 16,738,932 |
Length | 109 |
Max. P | 0.560711 |
Location | 16,738,823 – 16,738,932 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 79.89 |
Mean single sequence MFE | -30.47 |
Consensus MFE | -18.84 |
Energy contribution | -18.48 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.52 |
Mean z-score | -1.51 |
Structure conservation index | 0.62 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.560711 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16738823 109 - 22407834 AAAUCGUGACUUGUCAGGUGGGUGGCAACAAUGACGGUAAGGAGAAGCGCCGCAAGGAGUCCAUUCUGGACCUCUCCAAGUACUUGGAGAAACAGAUCCGCGUGAAAUU .............(((.(((((((....)..((..(((.((((...((.((....)).))...))))..)))(((((((....)))))))..)).)))))).))).... ( -35.20) >DroVir_CAF1 3896 106 - 1 UUA---UCGCUUCCUAGACAGGUGGCAACAACGAUGGCAAAGAGAAACGCCGCAAGGAGUCUAUUCUGGAUCUAUCCAAAUAUCUGGAGAAGCAAAUACGCGUCAAAUU ...---..((((((((((..(.((....)).)(((((...((((..((.((....)).))...))))....)))))......))))).)))))................ ( -27.80) >DroPse_CAF1 4252 109 - 1 UGUACGUCUCCUUCCAGGUGGGUGGAAACAAUGACGGCAAGGAGAAACGCCGCAAGGAGUCCAUUCUGGACCUGUCCAAAUAUCUGGAGAAACAGAUCCGUGUGAAAUU .((...(((((((((..((.(.((....)).).)))).)))))))...))((((.(((((((.....))))(((((((......))))....))).))).))))..... ( -33.60) >DroMoj_CAF1 2034 106 - 1 UAA---GUGCUUUUUAGACAGGAGGCAACAAUGAUGGAAAGGAAAAGCGCCGAAAGGAGUCUAUUUUGGAUCUGUCCAAAUACCUGGAGAAACAAAUACGUGUGAAAUU ...---.((.(((((...((((.(....)...((((((..((((.(((.((....)).).)).))))...))))))......)))).)))))))............... ( -21.10) >DroAna_CAF1 2138 99 - 1 U----------UUUUAGAUUGGCGGCAACAACGAUGGCAAGGAGAAGCGCCGCAAGGAGUCCAUUCUGGACCUCUCCAAGUAUCUCGAGAAACAGAUACGCGUCAAAUU .----------.......((((((....).......((..(((((....((....)).((((.....)))).)))))..((((((........)))))))))))))... ( -31.50) >DroPer_CAF1 2169 109 - 1 UGUACGUCUCCUUCCAGGUGGGUGGAAACAAUGACGGCAAGGAGAAACGCCGCAAGGAGUCCAUUCUGGACCUGUCCAAAUAUCUGGAGAAACAGAUCCGUGUGAAAUU .((...(((((((((..((.(.((....)).).)))).)))))))...))((((.(((((((.....))))(((((((......))))....))).))).))))..... ( -33.60) >consensus UAA___UCGCUUUCCAGAUGGGUGGCAACAAUGACGGCAAGGAGAAACGCCGCAAGGAGUCCAUUCUGGACCUGUCCAAAUAUCUGGAGAAACAGAUACGCGUGAAAUU ...........(((((((((...(....)...(((((...((((..((.((....)).))...))))....)))))....))))))))).................... (-18.84 = -18.48 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:52 2006