Locus 5930

Sequence ID 2L_DroMel_CAF1
Location 16,733,925 – 16,734,045
Length 120
Max. P 0.846083
window9427

overview

Window 7

Location 16,733,925 – 16,734,045
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.06
Mean single sequence MFE -44.45
Consensus MFE -21.85
Energy contribution -23.35
Covariance contribution 1.50
Combinations/Pair 1.23
Mean z-score -2.45
Structure conservation index 0.49
SVM decision value 0.77
SVM RNA-class probability 0.846083
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16733925 120 + 22407834
UUUACAAUUUUCGAGAUGAUCAGGCGCGGUCCGGUGCUCUCCAUGGAGCAAUGUGGCGGCACCGGAGGCGGUAUGUAUAUGUCGCCGAUCCGGGUGCCGCCCUCCUCGUCGUCGAAGAUC
......(((((((((((((..(((.((.(((((.((((((....)))))).)).)))(((((((((((((..((....))..))))..))).)))))))))))..))))).)))))))). ( -55.80)
>DroVir_CAF1 5185 120 + 1
UUGACAAUGCGCUUUAUGAUCAGACGCGGCCCGACGCUCUCCAUGGAGCAAUGCGGCGGCACCGGCGGCGGUAUAUAUAUAUCACCGAUGCGUGUGCCGCCCUCCUCAUCGUCAAAGAUU
(((((.(((.((((((((...(((.(((......)))))).)))))))).....((((((((((.(((.(((((....))))).)))...)).)))))))).....))).)))))..... ( -49.40)
>DroPse_CAF1 5697 120 + 1
UUCACAAUCUGUUUGAUGAUCAGCCGCGGUCCGGUGCUCUCCAUCGAACAGUGGGCCGGCACCGGCGGCGGUAUGUAUAUAUCCCCAAUGCGUGUCCCGCCUUCCUCAUCGUCAAAUACC
.........(((((((((((..(((..((((((.((.((......)).)).)))))))))...(((((.(..((((((.........))))))..))))))......))))))))))).. ( -45.10)
>DroGri_CAF1 7906 120 + 1
UUCACAAUGCGUUUGAUAAUUAAGCGGGGGCCGACACUCUCCAUCGAGCAGUGUGCGGGCACCGGUGGAGGUAUAUAUAUAUCACCGAUCCGUGUGCCGCCCUCUUCAUCAUCAAAUAUU
..........(((((((.((.(((..(((((((((((((((....))).))))).))(((((((((((.(((((....))))).)))..))).))))))))))))).)).)))))))... ( -44.00)
>DroWil_CAF1 4251 120 + 1
UUCACAAUCUUCUUUAUGAUCAAACGAGAUCCAGUACUCUCCAUGGAGCAAUAUGGUGGAACGGGUGGCGGUAUAUAAAUAUCACCAAUUCGUGUACCACCCUCCUCAUCAUCGAAGAUC
......((((((...(((((.....((((........))))...((((......(((((.((((((((.(((((....))))).)).))))))...)))))))))..))))).)))))). ( -33.50)
>DroMoj_CAF1 5216 120 + 1
UUGACAAUACGUUUGAUGAUCAGGCGCGGGCCGACGCUCUCCAUGGAACAAUGCGGUGGCACUGGCGGCGGUAUAUAUAUGUCUCCAAUGCGUGUGCCCCCCUCCUCGUCGUCGAAGAUG
...........(((((((((.(((.(.((((..((((......(((((((((((.((.((....)).)).)))).....))).))))..))))..))))..).))).))))))))).... ( -38.90)
>consensus
UUCACAAUCCGCUUGAUGAUCAGGCGCGGUCCGACGCUCUCCAUGGAGCAAUGUGGCGGCACCGGCGGCGGUAUAUAUAUAUCACCAAUGCGUGUGCCGCCCUCCUCAUCGUCAAAGAUC
............((((((((.((............((((......)))).....((((((((((..((.(((((....))))).))....)).))))))))...)).))))))))..... (-21.85 = -23.35 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:50 2006