Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,800,816 – 1,800,911 |
Length | 95 |
Max. P | 0.974564 |
Location | 1,800,816 – 1,800,911 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 91.90 |
Mean single sequence MFE | -15.44 |
Consensus MFE | -12.85 |
Energy contribution | -13.60 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.00 |
Mean z-score | -2.94 |
Structure conservation index | 0.83 |
SVM decision value | 1.73 |
SVM RNA-class probability | 0.974564 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1800816 95 + 22407834 AAACAUCCUUUCUGA---------CGGAUGACA-CUCACAUUGCAUAUCCUUACUCUUCCCCACUUAAAUUUCCUUCAUUUCUGGUGACGUGUUUUCCGUUUAUU .............((---------((((.((((-(((((.............................................)))).))))).)))))).... ( -15.78) >DroSec_CAF1 25790 105 + 1 AAAUAUCCUUUCUGAUUUCCCCCACGGAUGACAUCUCACUUUACAUAUCCUUACUCUUCCCCACUUAAAUUUCCUUCAUUUCUGGUGACGUGUUUUCCGUUUAUU .......................(((((.(((((.(((((...........................................))))).))))).)))))..... ( -15.33) >DroSim_CAF1 2969 105 + 1 AAAUAUCCUUUCUGAUUUCCCCCACGGAUGACAUCUCACUUUACAUAUCCUUACUCUUCCCCACUUAAAUUUCCUUCAUUUCUGGUGACGUGUUUUCCGUUUAUU .......................(((((.(((((.(((((...........................................))))).))))).)))))..... ( -15.33) >DroEre_CAF1 10611 105 + 1 AAAUAUCCUUUCUGAUUUCCCGCACGGAUGACAUCUCACUUUGCAUAUCCUCACUCUUUCCCUCUUAAAUUUCCUUCAUUUCUGGUGACGUGUUUUCCGUUUAUU .......................(((((.(((((.(((((...........................................))))).))))).)))))..... ( -15.33) >consensus AAAUAUCCUUUCUGAUUUCCCCCACGGAUGACAUCUCACUUUACAUAUCCUUACUCUUCCCCACUUAAAUUUCCUUCAUUUCUGGUGACGUGUUUUCCGUUUAUU .......................(((((.(((((.(((((...........................................))))).))))).)))))..... (-12.85 = -13.60 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:32 2006