Locus 5929

Sequence ID 2L_DroMel_CAF1
Location 16,720,710 – 16,720,828
Length 118
Max. P 0.755932
window9426

overview

Window 6

Location 16,720,710 – 16,720,828
Length 118
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 88.76
Mean single sequence MFE -31.28
Consensus MFE -25.47
Energy contribution -25.58
Covariance contribution 0.11
Combinations/Pair 1.09
Mean z-score -2.30
Structure conservation index 0.81
SVM decision value 0.49
SVM RNA-class probability 0.755932
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16720710 118 - 22407834
GCACUCUGAUCCGUAUCUUGUCGACCCGUGUCAACUUCCAGGUGAGUUUGAAAUUGAAAUGCGUAAAUUGUUUG--GUACAAUUUAAAUUCGAUUUCUUAUUCAUAGGUGCAAUACCAGU
(((((.(((..((..((.....))..))..)))........((((((..(((((((((.....((((((((...--..))))))))..)))))))))..)))))).)))))......... ( -32.30)
>DroVir_CAF1 2470 118 - 1
GCACUUUGAUACGCAUCCUGUCGACGCGUGUCAACUUUCAGGUGAGUUUGAAAUUGAAAUAUGUAAAUUGUUUG--GUACAAUUUAAAUUCGAUUUCUUAUUCAUAGGUGCAAUACCAGU
((((((((((((((.((.....)).))))))))).......((((((..(((((((((.....((((((((...--..))))))))..)))))))))..)))))).)))))......... ( -39.50)
>DroPse_CAF1 3026 118 - 1
GCACUCUGAUCCGCAUUCUGUCGACUCGCGUCAACUUUCAGGUGAGUUUGAAAUUGAAAUGUGUAAAUUGUUUG--UGCCAAUUUAAAUUCGAUUUCUUAUUCAUAGGUGCAAUACCAGC
(((((((((...((.....)).(((....))).....))))((((((..(((((((((.....(((((((....--...)))))))..)))))))))..)))))).)))))......... ( -29.30)
>DroGri_CAF1 2709 118 - 1
GCACGCUGACAAGGGUCCUGUCCACGCGCGUCAAUUUCCAAGUGAGUUUGAAAUUGAAAUGUGUAAAUUGUUUG--GUCCAAUUUAAAUUCGAUUUCUUAUUCAUAGGUGCAAUACCAGC
((((((.((((.(....)))))...))..............((((((..(((((((((.....(((((((....--...)))))))..)))))))))..))))))..))))......... ( -29.20)
>DroWil_CAF1 4253 120 - 1
GCACAUUGAUUCGGAUUCUGUCCACUCGUGUUAAUUUCCAGGUGAGUUUGAAAUUGAAAUGCCUAAAUUGUUUUGUGUACAAUUUAAAUUCGAUUUCUUAUUCAUAGGUGCAAUAUCAAU
((((........((((...))))..................((((((..(((((((((.....((((((((.......))))))))..)))))))))..))))))..))))......... ( -28.10)
>DroPer_CAF1 3125 118 - 1
GCACUCUGAUCCGCAUUCUGUCGACUCGCGUCAACUUUCAGGUGAGUUUGAAAUUGAAAUGUGUAAAUUGUUUG--UGCCAAUUUAAAUUCGAUUUCUUAUUCAUAGGUGCAAUACCAGC
(((((((((...((.....)).(((....))).....))))((((((..(((((((((.....(((((((....--...)))))))..)))))))))..)))))).)))))......... ( -29.30)
>consensus
GCACUCUGAUCCGCAUCCUGUCGACUCGCGUCAACUUCCAGGUGAGUUUGAAAUUGAAAUGUGUAAAUUGUUUG__GUACAAUUUAAAUUCGAUUUCUUAUUCAUAGGUGCAAUACCAGC
((((..((((.((..((.....))..)).))))........((((((..(((((((((.....(((((((.........)))))))..)))))))))..))))))..))))......... (-25.47 = -25.58 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:49 2006