Locus 5928

Sequence ID 2L_DroMel_CAF1
Location 16,718,031 – 16,718,151
Length 120
Max. P 0.659921
window9425

overview

Window 5

Location 16,718,031 – 16,718,151
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 90.83
Mean single sequence MFE -48.92
Consensus MFE -41.35
Energy contribution -40.93
Covariance contribution -0.41
Combinations/Pair 1.17
Mean z-score -1.75
Structure conservation index 0.85
SVM decision value 0.27
SVM RNA-class probability 0.659921
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16718031 120 + 22407834
CUGCGCCCAGUGCCACACCGUUGAGGCUGGUGGCAAGCACAAGGUUGGACCCAAUCUGCAUGGUCUGAUCGGUCGCAAGACCGGACAGGCGGCCGGAUUCGCGUACACGGACGCCAACAA
(((.(((((.((((((.((.....))...)))))).(((...(((((....)))))))).))(((((.((((((....)))))).)))))))))))....((((......))))...... ( -50.30)
>DroVir_CAF1 59 120 + 1
CUGCGCACAGUGCCACACCGUCGAGGCCGGUGGCAAGCACAAGGUGGGCCCCAAUCUGCACGGUCUGAUCGGUCGCAAGACCGGCCAGGCGCCCGGCUUCGCGUACACAGACGCCAACAA
.(((((((.(((...))).)).((((((((.(((..((.....))..)))............(((((..(((((....)))))..)))))..)))))))))))))............... ( -50.10)
>DroGri_CAF1 54 120 + 1
UUGCGCACAGUGCCACACCGUUGAGGCCGGUGGCAAGCACAAGGUUGGCCCCAAUCUGCACGGUCUGAUCGGUCGCAAGACUGGCCAGGCGGCCGGCUUUGCCUACACAGAUGCCAACAA
(((.((....((((((.((.....))...)))))).)).))).((((((....(((((....(((((..(((((....)))))..)))))(((.......)))....))))))))))).. ( -51.40)
>DroWil_CAF1 54 120 + 1
UUGUGCUCAGUGCCACACCGUUGAGGCUGGUGGCAAGCACAAGGUUGGACCCAAUCUACAUGGUCUGAUUGGACGCAAGACCGGACAGGCUGCCGGCUUUGCCUACACAGAUGCCAACAA
(((((((...((((((.((.....))...))))))))))))).(((((..((((((..........))))))..((((..((((.(.....)))))..))))...........))))).. ( -45.80)
>DroMoj_CAF1 6305 120 + 1
UUGCGCACAGUGCCACACCGUCGAGGCCGGUGGCAAGCACAAGGUUGGCCCCAAUCUGCACGGUCUGAUCGGCCGCAAGACCGGCCAGGCUCCCGGCUUUGCCUACACAGAUGCCAACAA
(((.((....((((((.((.....))...)))))).)).))).((((((....(((((...((((((..(((.(....).)))..))))))...(((...)))....))))))))))).. ( -48.30)
>DroAna_CAF1 55 120 + 1
UUGCGCUCAGUGCCACACCGUUGAGGCCGGUGGCAAGCACAAGGUUGGACCCAACCUACACGGUCUGAUCGGCCGCAAGACCGGACAGGCUGCCGGUUUCGCCUACACGGACGCCAACAA
..((((.....))....(((((((((((((..((.......((((((....)))))).......(((.((((.(....).)))).)))))..))))))))).....))))..))...... ( -47.60)
>consensus
UUGCGCACAGUGCCACACCGUUGAGGCCGGUGGCAAGCACAAGGUUGGACCCAAUCUGCACGGUCUGAUCGGUCGCAAGACCGGACAGGCGGCCGGCUUCGCCUACACAGACGCCAACAA
.(((((....((((((.((.....))...)))))).))...((((((....)))))))))..(((((..(((.(....).)))..)))))....(((((((......)))).)))..... (-41.35 = -40.93 +  -0.41)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:48 2006