Locus 5927

Sequence ID 2L_DroMel_CAF1
Location 16,712,101 – 16,712,196
Length 95
Max. P 0.544126
window9424

overview

Window 4

Location 16,712,101 – 16,712,196
Length 95
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 77.10
Mean single sequence MFE -29.60
Consensus MFE -20.13
Energy contribution -20.13
Covariance contribution 0.00
Combinations/Pair 1.09
Mean z-score -1.39
Structure conservation index 0.68
SVM decision value 0.02
SVM RNA-class probability 0.544126
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16712101 95 - 22407834
----------------CUAAGUUCUUUUUUGCUGUGUAAGGGGCAG---CAACAACGCAACAAGCUUACCCGACGGACAGUUCUUCUCGCUCUGCAGUUGCUUGUUGCUCGC------UC
----------------...(((........))).......((((((---((((((.(((((..((.....(((.(((......))))))....)).))))))))))))).))------)) ( -25.70)
>DroSec_CAF1 166732 105 - 1
AAAUU----AAGUGCACUAAGUU--UUUCUGCUGUGUAUGGGGCAG---CAACAACGCAACAAGCUUACCCGACGGACAGUUCUUCUCGCUCUGCAGUUGCUUGUUGCUCGC------UC
.....----..((((((..((..--...))...)))))).((((((---((((((.(((((..((.....(((.(((......))))))....)).))))))))))))).))------)) ( -31.90)
>DroEre_CAF1 167997 117 - 1
AAAUUAAGAAAGUGCCUUAAAU---UUACUGCCGUGCAUGGGGCACCACCAACAAUGCAACAAGCUUACCCGACUGACAGCUCUUCUCGCUCUGCAGUUGCUUGUUGCUCGCUCUCGCUC
.......((..((((((((...---.(((....)))..))))))))..........(((((((((......(((((..(((.......)))...))))))))))))))))((....)).. ( -31.20)
>consensus
AAAUU____AAGUGC_CUAAGUU__UUUCUGCUGUGUAUGGGGCAG___CAACAACGCAACAAGCUUACCCGACGGACAGUUCUUCUCGCUCUGCAGUUGCUUGUUGCUCGC______UC
............................(((((.(....).)))))..........(((((((((......(((.(.(((..(.....)..)))).))))))))))))............ (-20.13 = -20.13 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:47 2006