Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 16,711,670 – 16,711,787 |
Length | 117 |
Max. P | 0.645561 |
Location | 16,711,670 – 16,711,787 |
---|---|
Length | 117 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.81 |
Mean single sequence MFE | -37.50 |
Consensus MFE | -32.12 |
Energy contribution | -32.13 |
Covariance contribution | 0.01 |
Combinations/Pair | 1.17 |
Mean z-score | -1.94 |
Structure conservation index | 0.86 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.645561 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16711670 117 - 22407834 CGGUCAGGGCCUACCUAGCUGAAUCC-AAA--AAAAGGCAAGAAAGCUACAGGGCAGCCACCAGAAAGGAGCUGCCAACUUGCAUAUUACGGUAAGUUGGUGGGAGCGCUACCGACACCC ((((.((.((((((((((((....((-...--....))......)))))...((((((..((.....)).))))))(((((((........))))))))))))..)).))))))...... ( -39.50) >DroSec_CAF1 166298 119 - 1 CGGUCAGGGCCUACCUAGCUGAAUCA-AAAAAAAAAGGCAAGAAAGCUACAGGGCAGCCACCAGAAAGGAGCUGCCAACUUGCAUAUUACGGUAAGUUGGUGGGAGUGCUAACGCCGCCC (((..(((.....)))..))).....-.........(((.......((((..((((((..((.....)).))))))(((((((........))))))).))))..(.((....)))))). ( -38.40) >DroEre_CAF1 167563 120 - 1 CGGUCAGGGCCUACCUAGUUGAAACCCAAAAAAAAGGGCAAGAAAGCUACAGGGCAGCCACCAGAAAGGAGCUGCCAACUUGCAUAUUACGGUAAGUUUGAGGGACCGUUAGCGAUACCC (((((.((((.((((.........(((........))).......((.....((((((..((.....)).)))))).....)).......)))).))))....)))))............ ( -34.60) >consensus CGGUCAGGGCCUACCUAGCUGAAUCC_AAAAAAAAAGGCAAGAAAGCUACAGGGCAGCCACCAGAAAGGAGCUGCCAACUUGCAUAUUACGGUAAGUUGGUGGGAGCGCUAACGACACCC (((..(((.....)))..)))................(((((....(....)((((((..((.....)).))))))..))))).......(((..(((((((....)))))))...))). (-32.12 = -32.13 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:46 2006