| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,708,355 – 16,708,454 |
| Length | 99 |
| Max. P | 0.595000 |
| Location | 16,708,355 – 16,708,454 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 73.75 |
| Mean single sequence MFE | -18.15 |
| Consensus MFE | -10.09 |
| Energy contribution | -9.87 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.595000 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16708355 99 + 22407834 GUUCUGUUUAAGUAAACAUAACACAAAUUGAUUGCGAAAGCGAAAGAUUUAUGAG-------------UAAAGAUGUAAACAAUGUGGAGG--------UAAAUCAAUUAAAUUACCAUC ....((((((.((........((.(((((..((((....))))..))))).))..-------------.....)).)))))).......((--------(((..........)))))... ( -16.46) >DroSec_CAF1 162941 93 + 1 GUUUUCUGUAAAUAUACAUAGCAAAAAUUGAUUGCGAAAGCGAAAGAUUUAUGAC-------------UAAAGAUGUAAACAAUG--------------CAAAUCAAUUAAAUUACCAUC ((....(((..((((...(((((.(((((..((((....))))..))))).)).)-------------))...))))..)))..)--------------).................... ( -14.80) >DroEre_CAF1 164117 120 + 1 GUUUUGUGUAAAUAUAAAUAACGCAAAUUGAUUGCGAAAGCGAAAGAUUUAUGACUAUAUACAAAAACUAAAGGUGCAAACAAAGUGGUGGUAAAUAUGUAAAUCAAAUAAUUUACCAUU .(((((((((..(((((((..(((((.....)))))....(....))))))))....)))))))))((((...((....))....))))(((((((.(((.......))))))))))... ( -23.20) >consensus GUUUUGUGUAAAUAUACAUAACACAAAUUGAUUGCGAAAGCGAAAGAUUUAUGAC_____________UAAAGAUGUAAACAAUGUGG_GG________UAAAUCAAUUAAAUUACCAUC .....................((.(((((..((((....))))..))))).))................................................................... (-10.09 = -9.87 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:42 2006