| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,706,446 – 16,706,566 |
| Length | 120 |
| Max. P | 0.564234 |
| Location | 16,706,446 – 16,706,566 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 85.00 |
| Mean single sequence MFE | -38.40 |
| Consensus MFE | -30.75 |
| Energy contribution | -30.87 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.564234 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16706446 120 + 22407834 CAUUGUCUUUUGGCCCAGAAGAGCAGUCAAGCAAGAGGGCUGUGCCUUUUUUUUUUUUGGGAAGGGGAAAAACCGCAAAAGGGCGGCAAGUGCCCUACGUUUUUCCAUCCCACUUUUUCC ..........((((((((((((((......))((((((((...)))))))).)))))))))....((((((((......((((((.....))))))..))))))))...)))........ ( -36.50) >DroSec_CAF1 161108 106 + 1 -----------GGCCCAGAAGAGCAGUCAAGCAAGAGGGCUGCCCCUUUU---UUUUUGGGAAGGGGAAAAACCGCAAAAAGGCGGCAAGUGCCCUACGUUUUUCCAUCCCACUUUUACC -----------((....(((((((.(.....)...(((((..((((((((---(....))))))))).....((((......)))).....)))))..)))))))....))......... ( -33.90) >DroEre_CAF1 162260 119 + 1 CAUUGUCUUUUGGCCCAGAAGAGCAGUCAAGCAAGAGGGCUGUGCCUUUUUUGUUUUUGGGCAGGGGAAAAACCGCAAAAAGGCGGCAAGUGCCAUAGGUU-UUCCUCCCCACUUGCCCC ....(((((((.(((((((((.((......))((((((((...))))))))..))))))))).(.((.....)).).)))))))((((((((....(((..-..)))...)))))))).. ( -44.80) >consensus CAUUGUCUUUUGGCCCAGAAGAGCAGUCAAGCAAGAGGGCUGUGCCUUUUUU_UUUUUGGGAAGGGGAAAAACCGCAAAAAGGCGGCAAGUGCCCUACGUUUUUCCAUCCCACUUUUACC ...........((((((((((.((......))((((((......))))))...))))))))..((((((((((.((......))(((....)))....)))))))).))))......... (-30.75 = -30.87 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:34 2006