Locus 592

Sequence ID 2L_DroMel_CAF1
Location 1,800,149 – 1,800,245
Length 96
Max. P 0.649181
window976 window977

overview

Window 6

Location 1,800,149 – 1,800,245
Length 96
Sequences 3
Columns 96
Reading direction forward
Mean pairwise identity 80.84
Mean single sequence MFE -21.24
Consensus MFE -15.61
Energy contribution -16.83
Covariance contribution 1.23
Combinations/Pair 1.09
Mean z-score -1.49
Structure conservation index 0.73
SVM decision value 0.04
SVM RNA-class probability 0.554769
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1800149 96 + 22407834
GGAAAAGGAAAAUGCAUUCGUAUUUUCAAUUAAAGUGCGCAAUUAUUCAGUGAGCAACCGAAAAUGGAUGGUGUCCUUUGCACUUCCCACUUUCCC
((.....((((((((....)))))))).......((.(((.........))).))..))((((.(((..(((((.....)))))..))).)))).. ( -22.90)
>DroSim_CAF1 2288 88 + 1
GGAAAAGGAAAAUGCAUUCGUAUUUUCAAUUAAAGUGCGCAAUUAUUCAGUGAGCAACUGAAAAUGGAUGGUGUCCUUUGCACUUC--------CC
((((...((((((((....)))))))).......((((.......((((((.....))))))...((((...))))...)))))))--------). ( -24.90)
>DroEre_CAF1 9948 88 + 1
GGUCGAAGAAAGUGCAUUUGUAUUUUCAAUUAAAGUGCGCACUUAUUCAGUGAACAAAUGAAAAUGAA----GUCCUUUGCAU---CC-AUUUCCC
((.(((((...((((((((.............))))))))((((.((((.........))))....))----)).)))))...---))-....... ( -15.92)
>consensus
GGAAAAGGAAAAUGCAUUCGUAUUUUCAAUUAAAGUGCGCAAUUAUUCAGUGAGCAACUGAAAAUGGAUGGUGUCCUUUGCACUUCCC__UUUCCC
.......((((((((....)))))))).....((((((.......((((((.....))))))...(((.....)))...))))))........... (-15.61 = -16.83 +   1.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 7

Location 1,800,149 – 1,800,245
Length 96
Sequences 3
Columns 96
Reading direction reverse
Mean pairwise identity 80.84
Mean single sequence MFE -21.57
Consensus MFE -14.37
Energy contribution -15.93
Covariance contribution 1.56
Combinations/Pair 1.15
Mean z-score -1.77
Structure conservation index 0.67
SVM decision value 0.24
SVM RNA-class probability 0.649181
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1800149 96 - 22407834
GGGAAAGUGGGAAGUGCAAAGGACACCAUCCAUUUUCGGUUGCUCACUGAAUAAUUGCGCACUUUAAUUGAAAAUACGAAUGCAUUUUCCUUUUCC
.((((((.((((((((((..(((.....)))((((((((((((.((.(.....).)).))).....))))))))).....)))))))))))))))) ( -27.80)
>DroSim_CAF1 2288 88 - 1
GG--------GAAGUGCAAAGGACACCAUCCAUUUUCAGUUGCUCACUGAAUAAUUGCGCACUUUAAUUGAAAAUACGAAUGCAUUUUCCUUUUCC
((--------((((((((..(((.....)))((((((((((((.((.(.....).)).))).....))))))))).....))))))))))...... ( -23.40)
>DroEre_CAF1 9948 88 - 1
GGGAAAU-GG---AUGCAAAGGAC----UUCAUUUUCAUUUGUUCACUGAAUAAGUGCGCACUUUAAUUGAAAAUACAAAUGCACUUUCUUCGACC
.((((((-((---(..(....)..----)))))))))..........((((.(((((((.....................)))))))..))))... ( -13.50)
>consensus
GGGAAA__GGGAAGUGCAAAGGACACCAUCCAUUUUCAGUUGCUCACUGAAUAAUUGCGCACUUUAAUUGAAAAUACGAAUGCAUUUUCCUUUUCC
........((((((((((..(((.....)))((((((((((((.((.........)).))).....))))))))).....))))))))))...... (-14.37 = -15.93 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:31 2006