Locus 5919

Sequence ID 2L_DroMel_CAF1
Location 16,704,693 – 16,704,813
Length 120
Max. P 0.607492
window9409

overview

Window 9

Location 16,704,693 – 16,704,813
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 95.83
Mean single sequence MFE -27.24
Consensus MFE -26.26
Energy contribution -26.32
Covariance contribution 0.06
Combinations/Pair 1.04
Mean z-score -1.45
Structure conservation index 0.96
SVM decision value 0.15
SVM RNA-class probability 0.607492
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16704693 120 + 22407834
UCACAUUGACCCACUUGGCGCAUGCUGUGCAAUAUUAGCAGCAAAAUAACAGCAAAACAACAACUGACAGUUGCAGUUUGAGCCUGUGCCAAAUUCAAUUAUCAAUUUGUGCCUUUCAUG
................((((((((((((.........)))))).....................(((.(((((.((((((.((....))))))))))))).)))...))))))....... ( -27.60)
>DroSec_CAF1 159383 120 + 1
UCACAUUGACCCACUUGGCGCAUGCUGUGCAAUAUUAGCAGCAAAACAACAGCAAAACAACAACUGACAGUUGCAGUUUGAGCCUGUGCCAAAUUCAAUUAUCAAUUUGUGCCUUUCAUG
................((((((((((((.........)))))).....................(((.(((((.((((((.((....))))))))))))).)))...))))))....... ( -27.60)
>DroSim_CAF1 159314 120 + 1
UCACAUUGACCCACUUGGCGCAUGCUGUGCAAUAUUAGCAGCAAAACAACAGCAAAACAACAACUGACAGUUGCAGUUUGAGCCUGUGCCAAAUUCAAUUAUCAAUUUGUGCCUUUCAUG
................((((((((((((.........)))))).....................(((.(((((.((((((.((....))))))))))))).)))...))))))....... ( -27.60)
>DroEre_CAF1 160558 116 + 1
UCACAUUGACCCACUUGGCGCAUGCUGUGCAAUAUUAGCUGCAAAACAACAUCAGAA---UAACUGGCAGUUGCAGUUUGAGCCUGUGCCAAAUUCAAUUAUCAAUUUGUGCCU-UCAUG
.((((((((.....((((((((.(((...(((.....(((((((.......((((..---...))))...))))))))))))).)))))))).........))))..))))...-..... ( -26.14)
>consensus
UCACAUUGACCCACUUGGCGCAUGCUGUGCAAUAUUAGCAGCAAAACAACAGCAAAACAACAACUGACAGUUGCAGUUUGAGCCUGUGCCAAAUUCAAUUAUCAAUUUGUGCCUUUCAUG
................((((((((((((.........)))))).....................(((.(((((.((((((.((....))))))))))))).)))...))))))....... (-26.26 = -26.32 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:33 2006