| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,703,614 – 16,703,706 |
| Length | 92 |
| Max. P | 0.561847 |
| Location | 16,703,614 – 16,703,706 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 85.56 |
| Mean single sequence MFE | -29.43 |
| Consensus MFE | -20.70 |
| Energy contribution | -21.37 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.561847 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16703614 92 + 22407834 AGAUCGUGUUGGCGUGGGCGUCUUGAAGCUAACGGGCCAACACGAAACUCGCCCACAUA----UGAUGCAUAUGUAUGCAUAACGCGUAACUCCCC ...((((((((((.(((((........)))..)).)))))))))).....((..(((((----((...)))))))..))................. ( -30.30) >DroSec_CAF1 158307 96 + 1 AGAUCGUGUUGGCGUGGGCGUCUUAAAGCUAACGGGGCAACACGAAACUCGCCCACAUAUGUAUGAUGCAUAUGUAUGCAUAAUGCCUAACUCCCC ...((((((((.(.(((((........)))..)).).)))))))).....((..((((((((.....))))))))..))................. ( -28.80) >DroEre_CAF1 159587 89 + 1 AGCUCGUGACGGCGUGGGCGUCUCAAAGCUAACGGUUCAACACGAAGCUCGCCCACAUA-------UGCAUAUGUAUGCAUAACGCCCCCCUCCCC ..........((((((((((......((((..((........)).))))))))))).((-------(((((....)))))))..)))......... ( -29.20) >consensus AGAUCGUGUUGGCGUGGGCGUCUUAAAGCUAACGGGCCAACACGAAACUCGCCCACAUA____UGAUGCAUAUGUAUGCAUAACGCCUAACUCCCC ..........(((((((((((......))...((........))......)))))).........((((((....))))))...)))......... (-20.70 = -21.37 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:32 2006