Locus 5914

Sequence ID 2L_DroMel_CAF1
Location 16,701,844 – 16,701,946
Length 102
Max. P 0.683947
window9395

overview

Window 5

Location 16,701,844 – 16,701,946
Length 102
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 84.38
Mean single sequence MFE -33.08
Consensus MFE -24.17
Energy contribution -24.29
Covariance contribution 0.12
Combinations/Pair 1.09
Mean z-score -1.67
Structure conservation index 0.73
SVM decision value 0.31
SVM RNA-class probability 0.683947
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16701844 102 - 22407834
CAGCUUUGAAUGUGUAU-------UCACAGAAUCAUUCUUCAAUUCCCCCAUCAAGCAGCUUUUC-ACGGGGGAUUUGCGGGAUUUGGGG----------AUGUGGGGGAUUUGCUGACU
((((..(((.((((...-------.))))...)))(((((((..(((((.(((..((((.((..(-...)..)).))))..)))..))))----------)..)))))))...))))... ( -33.60)
>DroSec_CAF1 156602 102 - 1
CAGCUAUGAAUGUGUAU-------UCACAGAAUCAUUCUUCAAUUCCCUCAUCAAGCAGCUUUUC-ACGGGAGAUUUGCGGGAUUUGGGG----------AUUUGGGGGAUUUGCUGACG
((((..(((.((((...-------.))))...)))((((((((.(((((.(((..((((.((((.-....)))).))))..)))..))))----------).))))))))...))))... ( -33.90)
>DroSim_CAF1 156533 102 - 1
CAGCUAUGAGUGUGUAU-------UCACAGAAUCAUUCUUCAAUUCCCUCAUCAAGCAGCUUUUC-ACGGGAGAUUUGCGGGAUUUGGGU----------AUUUGGGGGAUUUGCUGACG
((((..(((.((((...-------.))))...)))((((((((..(((..(((..((((.((((.-....)))).))))..)))..))).----------..))))))))...))))... ( -31.50)
>DroEre_CAF1 157993 119 - 1
CAGCUUCGAAUGUGUAUGUCUCUUUCACAGAAUCAUCCUUCAAUUCCC-CAUCAACUAGCUUUUCUGCUGGGGAUUUGCGGGAUAUGGGGGCUUUGCGGAAUUUGGGGGAUUUGCUGAAU
(((((((((((.((((.(((((((((...)))..(((((.(((.((((-((.......((......)))))))).))).)))))..))))))..))))..)))))))......))))... ( -33.31)
>consensus
CAGCUAUGAAUGUGUAU_______UCACAGAAUCAUUCUUCAAUUCCCUCAUCAAGCAGCUUUUC_ACGGGAGAUUUGCGGGAUUUGGGG__________AUUUGGGGGAUUUGCUGACG
((((...((.((((...........))))...))(((((((((.((((..(((..((((.(((((....))))).))))..)))..))))............)))))))))..))))... (-24.17 = -24.29 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:20 2006