Locus 5912

Sequence ID 2L_DroMel_CAF1
Location 16,697,160 – 16,697,280
Length 120
Max. P 0.917434
window9392

overview

Window 2

Location 16,697,160 – 16,697,280
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 85.33
Mean single sequence MFE -48.34
Consensus MFE -31.98
Energy contribution -32.90
Covariance contribution 0.92
Combinations/Pair 1.28
Mean z-score -2.73
Structure conservation index 0.66
SVM decision value 1.11
SVM RNA-class probability 0.917434
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16697160 120 + 22407834
GUGUGCACUUAUGCGGCCUUUCCUCCGAGUGCACAUAAAGGUGUACUUUGUGGCGAGAGGCGUGCAUAAAGGCGCUUUCGCACUGGUUACACUUGUAGGGUCUAUCUCCCGUGUGGAUCC
..((((..(((((((((((((((..(((((((((......)))))).)))..).))))))).)))))))..)))).(((((((....(((....)))(((.......))))))))))... ( -49.80)
>DroSec_CAF1 152025 120 + 1
GGGUGCACUUAUGCGGCCUUUCCUCCGAGUGCACAAGAAGGUGUGCUUUGAGGCGAGAGUGUCUCAUAAAGGCGCUCUCGCACUGGUUACACUUGUGGGGUCUUUCCCUCGUGUGGAUCC
((((.(((...((..(((....(((.(((..(((......)))..))).)))((((((((((((.....))))))))))))...)))..))...(.((((....)))).)..))).)))) ( -54.10)
>DroSim_CAF1 151960 120 + 1
GGGUGCACUUAUGCGGCCUUUCCUCCGAGUGCACAAGAAGGUGUGCUUUGAGGCGAGAGUGUCUCAUAAAGGCGCUCUCGCACUGGUUACACUUGUGGGGUCUUUCCCUCGUGUGGAUAC
((.((((....)))).))....(((.(((..(((......)))..))).)))((((((((((((.....))))))))))))........(((.((.((((....)))).)).)))..... ( -51.90)
>DroEre_CAF1 152506 120 + 1
GGGAGCACCUAUAGGGCCUUUCCUCCGUGUGAACGAGAAGGUGUGCUUUGAGGCCAGAGUGGUCUAUAAAGGUGCUCUCACACUGAUUACACUUAUGCGGUCUUUCUCCCGUGUGAAUUC
((((((((((.(((((((...(((((((....))).).))).).))))))(((((.....)))))....)))))))))).............((((((((........)))))))).... ( -42.70)
>DroYak_CAF1 151942 120 + 1
GGGAGCACUUAUAGGGCCUUUCCUCCGAGUGAACAAGAAGGUGUGCUUUGAGGGCAGAGUGGUCCAUAAAGGUGCUCUCACACUGACCACACUUAUGCGGUCUUUCUCCUGUGUGGAUAC
((((((((((.(((((((..(((((.(((((.((......)).))))).)))))......))))).)).)))))))))).......((((((....(.((.....)).).)))))).... ( -43.20)
>consensus
GGGUGCACUUAUGCGGCCUUUCCUCCGAGUGCACAAGAAGGUGUGCUUUGAGGCGAGAGUGGUCCAUAAAGGCGCUCUCGCACUGGUUACACUUGUGGGGUCUUUCUCCCGUGUGGAUAC
((((((..(((((((((((..((((.((((((((......)))))))).))))..)).))..)))))))..)))))).........((((((....((((.....)))).)))))).... (-31.98 = -32.90 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:17 2006