Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,799,295 – 1,799,389 |
Length | 94 |
Max. P | 0.645699 |
Location | 1,799,295 – 1,799,389 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 92.02 |
Mean single sequence MFE | -24.25 |
Consensus MFE | -20.89 |
Energy contribution | -20.95 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.17 |
Mean z-score | -1.51 |
Structure conservation index | 0.86 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.645699 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1799295 94 + 22407834 UUAUCCAUGAUUUGUGCUUCUGAUUCGCCCUACAUUCAAUUAGGUGCCAUUCAGAUGCUCUGGAAAUGCAAAUCCGAAUGGGAGGCGAUAAAAG ..........(((((((((((.(((((.((((........))))(((..(((((.....)))))...)))....))))).)))))).))))).. ( -25.70) >DroSec_CAF1 6728 94 + 1 UAAUCCAUGAUUUGUGUUUCCGAUUCGCCCUACUUUCAAUUAGGUGCUCUUCAGUUGCUCUGAAAAUGCAAAUCCGAAUGGGAGGCGAUAAAAG ..........(((((((((((.(((((.((((........))))(((..(((((.....)))))...)))....))))).)))))).))))).. ( -25.60) >DroSim_CAF1 1431 94 + 1 UAAUCCAUGAUUUGUGUUUCCGAUUCGCCCUACUUUCAAUUAGCUGCUAUUCAGUUGCUCUGAAAAUGCAAAUCCGAAUGGGAGGCGAUAAAAG ..........(((((((((((.(((((..(((........))).(((..(((((.....)))))...)))....))))).)))))).))))).. ( -22.00) >DroEre_CAF1 9098 94 + 1 UAAUCCAUGAUUUUUGUUCCCGAUUCGCCCUACUUUCAAUUAGGGGCCUUGCAGUUGCUCUGAAAAUGCAAAUCCGAAUGGGAGGCAAUAAAAG .............((((..((.((((((((((........)))))...(((((.((.......)).)))))...))))).))..))))...... ( -23.70) >consensus UAAUCCAUGAUUUGUGUUUCCGAUUCGCCCUACUUUCAAUUAGGUGCCAUUCAGUUGCUCUGAAAAUGCAAAUCCGAAUGGGAGGCGAUAAAAG ..............(((((((.(((((.((((........)))).((..(((((.....)))))...)).....))))).)))))))....... (-20.89 = -20.95 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:30 2006