Locus 591

Sequence ID 2L_DroMel_CAF1
Location 1,799,295 – 1,799,389
Length 94
Max. P 0.645699
window975

overview

Window 5

Location 1,799,295 – 1,799,389
Length 94
Sequences 4
Columns 94
Reading direction forward
Mean pairwise identity 92.02
Mean single sequence MFE -24.25
Consensus MFE -20.89
Energy contribution -20.95
Covariance contribution 0.06
Combinations/Pair 1.17
Mean z-score -1.51
Structure conservation index 0.86
SVM decision value 0.23
SVM RNA-class probability 0.645699
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1799295 94 + 22407834
UUAUCCAUGAUUUGUGCUUCUGAUUCGCCCUACAUUCAAUUAGGUGCCAUUCAGAUGCUCUGGAAAUGCAAAUCCGAAUGGGAGGCGAUAAAAG
..........(((((((((((.(((((.((((........))))(((..(((((.....)))))...)))....))))).)))))).))))).. ( -25.70)
>DroSec_CAF1 6728 94 + 1
UAAUCCAUGAUUUGUGUUUCCGAUUCGCCCUACUUUCAAUUAGGUGCUCUUCAGUUGCUCUGAAAAUGCAAAUCCGAAUGGGAGGCGAUAAAAG
..........(((((((((((.(((((.((((........))))(((..(((((.....)))))...)))....))))).)))))).))))).. ( -25.60)
>DroSim_CAF1 1431 94 + 1
UAAUCCAUGAUUUGUGUUUCCGAUUCGCCCUACUUUCAAUUAGCUGCUAUUCAGUUGCUCUGAAAAUGCAAAUCCGAAUGGGAGGCGAUAAAAG
..........(((((((((((.(((((..(((........))).(((..(((((.....)))))...)))....))))).)))))).))))).. ( -22.00)
>DroEre_CAF1 9098 94 + 1
UAAUCCAUGAUUUUUGUUCCCGAUUCGCCCUACUUUCAAUUAGGGGCCUUGCAGUUGCUCUGAAAAUGCAAAUCCGAAUGGGAGGCAAUAAAAG
.............((((..((.((((((((((........)))))...(((((.((.......)).)))))...))))).))..))))...... ( -23.70)
>consensus
UAAUCCAUGAUUUGUGUUUCCGAUUCGCCCUACUUUCAAUUAGGUGCCAUUCAGUUGCUCUGAAAAUGCAAAUCCGAAUGGGAGGCGAUAAAAG
..............(((((((.(((((.((((........)))).((..(((((.....)))))...)).....))))).)))))))....... (-20.89 = -20.95 +   0.06) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:30 2006