Locus 5907

Sequence ID 2L_DroMel_CAF1
Location 16,691,150 – 16,691,243
Length 93
Max. P 0.773101
window9380

overview

Window 0

Location 16,691,150 – 16,691,243
Length 93
Sequences 4
Columns 93
Reading direction reverse
Mean pairwise identity 71.24
Mean single sequence MFE -18.09
Consensus MFE -10.45
Energy contribution -11.02
Covariance contribution 0.56
Combinations/Pair 1.12
Mean z-score -1.66
Structure conservation index 0.58
SVM decision value 0.54
SVM RNA-class probability 0.773101
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16691150 93 - 22407834
UUGCAUUCUUUUCUGUUUUAUCAAUUCGAACGAUAGAAGCGGUAAGCAGAAACUCAAGUAAUUAUUUUCAGCAGCUUUAGUUUCUAUCGAGCU
..((................((.....)).((((((((((...((((.((((...((....))..))))....))))..)))))))))).)). ( -18.40)
>DroSim_CAF1 146511 93 - 1
UAGUAUUCCUUCCUGUUUUACCAAUUCGAACGAAAGAAUCGGUAAGCAGAAACUCAAGUAAUUAUUUUAAGCAGCUUUAGUUUCUAUCGAGUU
....((((......((((.(((.((((........)))).)))))))(((((((.((((..............)))).)))))))...)))). ( -17.84)
>DroEre_CAF1 146224 74 - 1
UAGCU-------------------UUCGAACGAAAGAAGCGAGAAGCAAAAACUGAAGUAAUUAUUUUAAGCAGCUUUAGUUUCUAUGUUGUU
..(((-------------------((((..(....)...)))).)))..((((((((((..............)))))))))).......... ( -16.14)
>DroYak_CAF1 145569 73 - 1
AAACU-------------------UUCGAACGAAAGUAACGAGGGGCAAAAGCUGAAGUAAUUAUUUU-AGCGGCUUUAGUUUCUGUGGAGUU
...((-------------------((((.((....))..))))))(((.((((((((((..(((...)-))..)))))))))).)))...... ( -20.00)
>consensus
UAGCA___________________UUCGAACGAAAGAAGCGAGAAGCAAAAACUCAAGUAAUUAUUUUAAGCAGCUUUAGUUUCUAUCGAGUU
.........................(((..(....)...))).....((((((((((((..............))))))))))))........ (-10.45 = -11.02 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:06 2006