Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 16,683,437 – 16,683,554 |
Length | 117 |
Max. P | 0.922497 |
Location | 16,683,437 – 16,683,554 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 92.88 |
Mean single sequence MFE | -25.23 |
Consensus MFE | -21.02 |
Energy contribution | -22.02 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.13 |
Mean z-score | -2.32 |
Structure conservation index | 0.83 |
SVM decision value | 1.15 |
SVM RNA-class probability | 0.922497 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16683437 117 + 22407834 AAAGAACAUUCAUAAAUUUGUUUACUGCAAUCCAUUUCUGCAAAUCCACGCUUGCGUUCUUUCCCCUUCUAAAUCCCAGUCACUCCUGAUCUUGGCUUACUGGAGGAGACUAAAUCC .((((((..........((((.....)))).........((((........))))))))))((.(((((......(((((((....))))..)))......))))).))........ ( -20.40) >DroSec_CAF1 138314 117 + 1 AAAGAGCAUUCAUAAAUUUGUUUACUGCAAUCCAUUUCCGCAAAUCCACGCUUGCGUUCUUUCCCCUUCUAAAUCCAAGUCACUCCUGAUCUUGGCUUACUGGAGGAGACUAAAUCC .((((((..........((((.....)))).........((((........))))))))))((.(((((.....((((((((....))).)))))......))))).))........ ( -24.10) >DroEre_CAF1 138765 117 + 1 AAAGAACAUUCAUAAAUUUGUUUACUGCAAUCCAUUUCCGCAAAUCCACGCUUGCGUUCUGCCCCCUUCUAAGCCAAAGUCAUUGCUGAUCUUGGCUUACUGGUGGAAACUAAAUCC ..(((((..........((((.....)))).........((((........)))))))))..((((...((((((((..(((....)))..))))))))..)).))........... ( -28.00) >DroYak_CAF1 138078 117 + 1 AAAGAACAUUCAUAAAUUUGUUUACGGCAAUCCAUUUCCGCAAAUCCACGCUUGCGUUCUUCCCCUUUCUAAGCCCCAGUCACUCCUGAUCUGGGCUUACUGGAGGAAACUAAAUCC ...((((..........((((.....)))).........((((........))))))))((((((....(((((((..((((....))))..)))))))..)).))))......... ( -28.40) >consensus AAAGAACAUUCAUAAAUUUGUUUACUGCAAUCCAUUUCCGCAAAUCCACGCUUGCGUUCUUCCCCCUUCUAAACCCAAGUCACUCCUGAUCUUGGCUUACUGGAGGAAACUAAAUCC .((((((..........((((.....)))).........((((........)))))))))).((((...((((((((.((((....)))).))))))))..)).))........... (-21.02 = -22.02 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:52 2006