Locus 5901

Sequence ID 2L_DroMel_CAF1
Location 16,680,044 – 16,680,147
Length 103
Max. P 0.820572
window9363

overview

Window 3

Location 16,680,044 – 16,680,147
Length 103
Sequences 3
Columns 106
Reading direction forward
Mean pairwise identity 94.92
Mean single sequence MFE -22.00
Consensus MFE -19.84
Energy contribution -20.40
Covariance contribution 0.56
Combinations/Pair 1.09
Mean z-score -2.17
Structure conservation index 0.90
SVM decision value 0.68
SVM RNA-class probability 0.820572
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16680044 103 + 22407834
UGGAGUCGCGGUCUUAUUCGAUGAGUGAAAGACGAAGCAAAAUCAAAAAUAAAGAAGCAAUUCGACAAAUGGCGCAAGCUAUUAAAAUAAAUAUGUACA---AUGU
....(((((.(((((((((...)))))..))))...))...............(((....)))))).((((((....))))))................---.... ( -21.10)
>DroEre_CAF1 135486 103 + 1
UGGAGUCGCGGUCUUAUUCGAUGAGCGAAAGACGAAGCGAAAUCAAAAAUAAAGAAGGAAUUCGACAAAUGGCGCAAGCUAUUAAAAUAAAUAUGUACA---AUGU
(((..((((.(((((..(((.....))))))))...))))..)))........(((....)))....((((((....))))))................---.... ( -22.60)
>DroYak_CAF1 134589 106 + 1
UGGAGUCGCGGUUUUAUUCGAUGAGCGAAAGACGAGGCAAAAUCAAAAAUAAAGAAGCAAUUCGACAAAUGGCGCAAGCUAUUAAAAUAAAUAUGUACAUGUAUGU
....(((..((((((.((((.....(....).))))..)))))).........(((....)))))).((((((....))))))....................... ( -22.30)
>consensus
UGGAGUCGCGGUCUUAUUCGAUGAGCGAAAGACGAAGCAAAAUCAAAAAUAAAGAAGCAAUUCGACAAAUGGCGCAAGCUAUUAAAAUAAAUAUGUACA___AUGU
....(((((.(((((..(((.....))))))))...))...............(((....)))))).((((((....))))))....................... (-19.84 = -20.40 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:50 2006