Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,798,792 – 1,798,894 |
Length | 102 |
Max. P | 0.547975 |
Location | 1,798,792 – 1,798,894 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.75 |
Mean single sequence MFE | -28.70 |
Consensus MFE | -19.49 |
Energy contribution | -20.30 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.14 |
Mean z-score | -1.59 |
Structure conservation index | 0.68 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.547975 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1798792 102 + 22407834 UGUGUCGGAGGAUGUGUCUCAGUGUGAGUAUGUGCUGACAUCAAGUUCAUAAAAAUAUCUGCCAUAAUUGCAGCUAAGUCAGCAAAUGUUGACUGC------------------UAUUCC ((((.((((...((((.((..((((.(((....))).))))..))..))))......)))).)))).....(((..(((((((....)))))))))------------------)..... ( -26.00) >DroSec_CAF1 6225 112 + 1 UGUGUCGGAGGAUGUGUCUCAGUAUGAGUAUGUGCUGACAUCAAGUUCAUAAAAAUAUCUGCCAUAAUUGCAGCUAAGUCAGCAAAUGUUGACUGCUGUCCC-------CCUC-UAUUCC ......(((((.((((...((((((...((((.(((.......))).))))...))).))).))))...(((((..(((((((....))))))))))))...-------))))-)..... ( -31.60) >DroSim_CAF1 930 112 + 1 UGUGUCGGAGGAUGUGUCUCAGUGUGAGUAUGUGCUGACAUCAAGUUCAUAAAAAUAUCUGCCAUAAUUGCAGCUAAGUCAGCAAAUGUUGACUGCUGUCCC-------CCUC-UAUUCC ......(((((.((((.((..((((.(((....))).))))..))..))))..................(((((..(((((((....))))))))))))...-------))))-)..... ( -31.60) >DroPer_CAF1 13785 111 + 1 ---AU------CUGUAUCUCAGUGUGGGUUCGGGUUAACAUCAAGUUCAUAAAAAUAUCUGCCAUAAUUGCAGCUAAGUCAGCAAAUGUUGACUACUAUCCUGACACUGCCUCACAUCUC ---..------..........(((((((((((((.((..................((.((((.......)))).))(((((((....)))))))..)).)))))....))).)))))... ( -25.60) >consensus UGUGUCGGAGGAUGUGUCUCAGUGUGAGUAUGUGCUGACAUCAAGUUCAUAAAAAUAUCUGCCAUAAUUGCAGCUAAGUCAGCAAAUGUUGACUGCUGUCCC_______CCUC_UAUUCC .(((((((...(((((.(((.....)))))))).)))))))..............((.((((.......)))).))(((((((....))))))).......................... (-19.49 = -20.30 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:29 2006