Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 16,669,829 – 16,669,936 |
Length | 107 |
Max. P | 0.734461 |
Location | 16,669,829 – 16,669,936 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 79.27 |
Mean single sequence MFE | -20.61 |
Consensus MFE | -12.34 |
Energy contribution | -12.58 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.08 |
Mean z-score | -1.88 |
Structure conservation index | 0.60 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.734461 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16669829 107 - 22407834 UACACGCCCCACUGCACACAAGCGUAACUAUAACAAUCCUCGCAUAAAUACUGUGGAGGUCAAAAUAAUAAUA---GUAAGUUAAGCAAUUGCAAAUUU-------UCCAGUAU--ACU ..........((((......(((...(((((......((((.((((.....))))))))...........)))---))..)))..((....))......-------..))))..--... ( -14.03) >DroSec_CAF1 124461 103 - 1 UACACGCCCCACUGCACACAAGUGCAACUAUAACAAUCCUCGCAGAAAUACUGUCGAGGUCAAAAUAAUAAUAAUAGUAA----AACAUUUUCGGACUU-------UUCUUUAC----- ........((..(((((....)))))(((((......((((((((.....))).)))))..............)))))..----.........))....-------........----- ( -18.65) >DroSim_CAF1 116315 107 - 1 AACACGCCCCACUGCACACAAGUGCAACUAUAACAAUCCUCGCAGAAAUACUGUCGAGGUCAAAAUAAUAAUAAUAGUAAGUUGAGCCAUUCCAAAUUU-------UCCAGUAU----- .....((.(.(((((((....)))).(((((......((((((((.....))).)))))..............))))).))).).))............-------........----- ( -19.05) >DroEre_CAF1 125587 114 - 1 CGCACACCCCACUGCACACAAGUGCAACUAUAACAAUCCUCGCAGAAAUACUGUGGAGGUCAAAAUAAUAAUA---GUAAGUUGCGCCAUUGCGAAUAUGCUUAAAUCAAGUGU--GCC .((((((.....(((((....)))))...........((((((((.....)))).))))..............---.(((((..(((....))).....)))))......))))--)). ( -29.20) >DroYak_CAF1 124478 108 - 1 UAUACACCCGACUGCACACAAGUGCAACUACAACAAACCUCGCAGAAAUACUGUGGAGGUCAAAAUAAUAAUA---AUAAGUUGAGCAAUGGCAAUUU--------UCAAGUAUUUAGC .((((...(((((((((....))))...........(((((((((.....)))).))))).............---...))))).((....)).....--------....))))..... ( -22.10) >consensus UACACGCCCCACUGCACACAAGUGCAACUAUAACAAUCCUCGCAGAAAUACUGUGGAGGUCAAAAUAAUAAUA___GUAAGUUGAGCAAUUGCAAAUUU_______UCCAGUAU_____ ............(((((....)))))...........((((((((.....)))).))))............................................................ (-12.34 = -12.58 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:46 2006