Locus 5896

Sequence ID 2L_DroMel_CAF1
Location 16,658,244 – 16,658,351
Length 107
Max. P 0.870091
window9353

overview

Window 3

Location 16,658,244 – 16,658,351
Length 107
Sequences 4
Columns 108
Reading direction forward
Mean pairwise identity 95.68
Mean single sequence MFE -34.95
Consensus MFE -31.90
Energy contribution -32.15
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.94
Structure conservation index 0.91
SVM decision value 0.87
SVM RNA-class probability 0.870091
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16658244 107 + 22407834
GCAUUUGCCCUCCCGGCAGGAUUGUAAAAUUCGUGUAUAAUACGUGUAGAACUAGCAUGUGGGCGUGGCCCCGCCCGCAGCGCAUGAUUU-UUUUACAAGACUUUUUG
.....((((.....))))(..((((((((.((((((.......((.....))..((.((((((((......))))))))))))))))...-))))))))..)...... ( -36.40)
>DroSec_CAF1 112991 108 + 1
GCAUUUGCCCUCCCGGCAGGAUUGUAAAAUUCGUGUAUAAUACGUGUAGAACUAGCAUGUGGGCGUGGCCCCGCCCGCAGCGCAUUAUUUUUUUUACAAGACUUUUUG
.....((((.....))))(..((((((((..(((((...)))))..........((.((((((((......))))))))..))........))))))))..)...... ( -31.40)
>DroEre_CAF1 114176 108 + 1
GCAUUUGCCCUCCCGGCAGGAUUGUAAAAUUCGUGUAUAAUACGUGUAGAACUAGCAUGUGGGCGUGGCCCCGCCCGCUGUGCAUGAUUUUUUUUACAAGACUUUUUG
.....((((.....))))(..((((((((.(((((((((..((((((.......))))))(((((......)))))..)))))))))....))))))))..)...... ( -36.30)
>DroYak_CAF1 112308 108 + 1
GCAUUUGCCCUCCAGGCAGGAUUGUAAAAUUCGUGUAAAAUACGUGUAGAGCUCGCAUGUGGGCGUGGACCCGCCCGCUGCGCAUGAUUUUUUUUACAAGACUUUUUG
.....((((.....))))(..((((((((.((((((.......((.....))..(((.(((((((......))))))))))))))))....))))))))..)...... ( -35.70)
>consensus
GCAUUUGCCCUCCCGGCAGGAUUGUAAAAUUCGUGUAUAAUACGUGUAGAACUAGCAUGUGGGCGUGGCCCCGCCCGCAGCGCAUGAUUUUUUUUACAAGACUUUUUG
.....((((.....))))(..((((((((.((((((.......((((.......))))(((((((......)))))))...))))))....))))))))..)...... (-31.90 = -32.15 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:41 2006