| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,657,412 – 16,657,503 |
| Length | 91 |
| Max. P | 0.868675 |
| Location | 16,657,412 – 16,657,503 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 74.93 |
| Mean single sequence MFE | -24.11 |
| Consensus MFE | -12.02 |
| Energy contribution | -12.63 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.50 |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.868675 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16657412 91 + 22407834 GGACUCGCACCACCAGCAUCA---GCACCACAUGCA------CCACUCACAUCACAUGCACCACGCCCACCAUCCGCACACCGGAAUGGGCGGUAGCUCU ......((.......))...(---(((((...((((------..............))))....(((((...((((.....)))).)))))))).))).. ( -21.94) >DroPse_CAF1 126436 84 + 1 ----------CACAUGCAUCACACGCACCAUAUGCA------CCACUCCCAUCACAUGCACCAUGCCCAUCAUCCGCACGGCGGCGGUGGCGUCGGUGCC ----------....(((((............)))))------...............((((((((((.(((..((((...)))).)))))))).))))). ( -24.30) >DroSec_CAF1 112166 91 + 1 GGACUCGCACCACCAGCAUCA---GCACCACAUGCA------CCACUCGCAUCACAUGCACCACGCCCACCAUCCGCACACCGGAAUGGGCGGUAGCUCU ......(((((..........---(((....((((.------......))))....))).....(((((...((((.....)))).)))))))).))... ( -25.20) >DroYak_CAF1 111484 91 + 1 UGACUCGCACCACCAGCAUCA---GCAUCAUUUGCA------UCACUCGCAUCAUAUGCACCACGCCCACCAUCCGCACACCGGAAUGGGCGGUAGCUCU ......(((((..........---((((....(((.------......)))....)))).....(((((...((((.....)))).)))))))).))... ( -25.90) >DroAna_CAF1 52823 95 + 1 --ACGCAGGACAUCACCAUCA---GCAUCACAUGCACCAACACCACUCGCAUCACAUGCACCACGCGCACCAUCCGCACACCGGUAUGGGCAUGGGCUCC --.....((......))...(---((....(((((.(((..(((....((((...)))).....(((.......))).....))).)))))))).))).. ( -23.00) >DroPer_CAF1 126279 84 + 1 ----------CACAUGCAUCACACGCACCAUAUGCA------CCACUCCCAUCACAUGCACCAUGCCCAUCAUCCGCACGGCGGCGGUGGCGUCGGUGCC ----------....(((((............)))))------...............((((((((((.(((..((((...)))).)))))))).))))). ( -24.30) >consensus __ACUCGCACCACCAGCAUCA___GCACCACAUGCA______CCACUCGCAUCACAUGCACCACGCCCACCAUCCGCACACCGGAAUGGGCGGUAGCUCC ........................(((.....)))......................((....((((((....(((.....)))..))))))...))... (-12.02 = -12.63 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:40 2006